hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj19219/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0843  ( 690 res)   mfj19219

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LIM      Zinc-binding domain present in Lin-11, Isl-1   182.4    4.2e-50   4
VHP      Villin headpiece domain                         80.0    2.8e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LIM        1/4      30    81 ..     1    52 []    41.5  1.1e-07
LIM        2/4      89   141 ..     1    52 []    49.0  6.2e-10
LIM        3/4     158   209 ..     1    52 []    72.2  6.3e-17
LIM        4/4     217   269 ..     1    52 []    43.4  3.1e-08
VHP        1/1     655   690 .]     1    36 []    80.0  2.8e-19

Alignments of top-scoring domains:
LIM: domain 1 of 4, from 30 to 81: score 41.5, E = 1.1e-07
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg.tffekdgk
                       C +Cg    g ev+r+ ++++H  CF+C++C++ L+ ++ff+k+ +
   mKIAA0843    30    QCYRCGDTCKG-EVVRVHNNHFHIRCFTCQVCGCGLAQsGFFFKNQE 75   

                   lyCkdc<-*
                     C  +   
   mKIAA0843    76 YICTQD    81   

LIM: domain 2 of 4, from 89 to 141: score 49.0, E = 6.2e-10
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg..tffekdg
                      +C  C+ +Itg ev++alg+++Hp+CF+Cs C+kp+  +++  + + 
   mKIAA0843    89    RCDSCRDFITG-EVISALGRTYHPKCFVCSLCRKPFPIgdKVTFSGK 134  

                   klyCkdc<-*
                   +  C+ c   
   mKIAA0843   135 ECVCQTC    141  

LIM: domain 3 of 4, from 158 to 209: score 72.2, E = 6.3e-17
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLggtffekdgkl
                      +CagC++ I   + l al+k wH++CFkC++C+  L+g++++kdg +
   mKIAA0843   158    HCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVP 204  

                   yCkdc<-*
                   yC+++   
   mKIAA0843   205 YCESD    209  

LIM: domain 4 of 4, from 217 to 269: score 43.4, E = 3.1e-08
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg..tffekdg
                      kC  C++ I+g +vl+a+gk++Hp C +C +C++ ++++++ +  + 
   mKIAA0843   217    KCETCDRYISG-RVLEAGGKHYHPTCARCVRCHQMFTEgeEMYLTGS 262  

                   klyCkdc<-*
                   ++  + c   
   mKIAA0843   263 EVWHPIC    269  

VHP: domain 1 of 1, from 655 to 690: score 80.0, E = 2.8e-19
                   *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-*
                      +Ls+e+F++vFgMt++EF +L+lWK+n+LKK+++LF   
   mKIAA0843   655    HLSQEEFYQVFGMTISEFERLALWKRNELKKQARLF    690  

//