hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj19219/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0843 ( 690 res) mfj19219 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LIM LIM domain 176.1 5.8e-49 4 VHP Villin headpiece domain 80.0 4.7e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LIM 1/4 31 87 .. 1 62 [] 45.1 1.6e-09 LIM 2/4 90 147 .. 1 62 [] 51.1 2.4e-11 LIM 3/4 159 215 .. 1 62 [] 77.5 2.8e-19 LIM 4/4 218 275 .. 1 62 [] 25.4 0.00019 VHP 1/1 655 690 .] 1 36 [] 80.0 4.7e-20 Alignments of top-scoring domains: LIM: domain 1 of 4, from 31 to 87: score 45.1, E = 1.6e-09 *->CagCgkpIydrevvmrAlnkvwHpeCFrCavCgkpLtegdefyekdg C++Cg+++ evv r+ n+++H+ CF+C+vCg+ L++++ f++k+ mKIAA0843 31 CYRCGDTC-KGEVV-RVHNNHFHIRCFTCQVCGCGLAQSG-FFFKNQ 74 skelYCkkDYyklfg<-* + C +DY++l+g mKIAA0843 75 -E-YICTQDYQQLYG 87 LIM: domain 2 of 4, from 90 to 147: score 51.1, E = 2.4e-11 *->CagCgkpIydrevvmrAlnkvwHpeCFrCavCgkpLtegdefyekdg C C + I++ +++ Al++++Hp+CF+C+ C+kp+ gd+ + + mKIAA0843 90 CDSCRDFITGEVIS--ALGRTYHPKCFVCSLCRKPFPIGDKVTFSGK 134 skelYCkkDYyklfg<-* + +C+ + + + + mKIAA0843 135 -E-CVCQTCSQSMTS 147 LIM: domain 3 of 4, from 159 to 215: score 77.5, E = 2.8e-19 *->CagCgkpIy.drevvmrAlnkvwHpeCFrCavCgkpLtegdefyekd CagC++ I +++ ++ Al+k wH++CF+C++C Lt + +kd mKIAA0843 159 CAGCKEEIKhGQSLL--ALDKQWHVSCFKCQTCSVILTGE--YISKD 201 gskelYCkkDYyklfg<-* g +YC++DY+ +fg mKIAA0843 202 G-V-PYCESDYHSQFG 215 LIM: domain 4 of 4, from 218 to 275: score 25.4, E = 0.00019 *->CagCgkpIydrevvmrAlnkvwHpeCFrCavCgkpLtegdefyekdg C C++ I +r++ A++k++Hp C rC C++ +teg e y+ mKIAA0843 218 CETCDRYISGRVLE--AGGKHYHPTCARCVRCHQMFTEGEEMYLTGS 262 sk..elYCkkDYyklfg<-* + + Ck+ +++ mKIAA0843 263 -EvwHPICKQ---AARA 275 VHP: domain 1 of 1, from 655 to 690: score 80.0, E = 4.7e-20 *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-* +Ls+e+F++vFgMt++EF +L+lWK+n+LKK+++LF mKIAA0843 655 HLSQEEFYQVFGMTISEFERLALWKRNELKKQARLF 690 //