hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbh/mbh01293/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0842 ( 1087 res) mbh01293 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PH Pleckstrin homology domain. 56.7 3.1e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/1 840 943 .. 1 82 [] 56.7 3.1e-12 Alignments of top-scoring domains: PH: domain 1 of 1, from 840 to 943: score 56.7, E = 3.1e-12 *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk...kpkgs ++keG L+ k +++ +k++wk +++vL ng L+ y ++++ p s mKIAA0842 840 ITKEGMLHYKAstsylgKeHWKACFVVLSNGILYQYPDRtdvIPLLS 886 ipLsgcsvre.p.........cFeivt.dr.tlllqAeseeereeWveal +++ g ++ +++ +++++F+++ dr++l+l+A+se e+ +W+++l mKIAA0842 887 VNMGGEQCGGcRrsnttdrphAFQVILaDRpCLELSADSEAEMADWMQHL 936 qsaiaka<-* ++a++k mKIAA0842 937 CQAVSKG 943 //