hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01293/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0842  ( 1087 res)   mbh01293

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RUN      RUN domain                                     148.9    8.6e-41   1
PH       PH domain                                       66.0    8.1e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RUN        1/1     113   227 ..     1   174 []   148.9  8.6e-41
PH         1/1     840   941 ..     1    92 []    66.0  8.1e-16

Alignments of top-scoring domains:
RUN: domain 1 of 1, from 113 to 227: score 148.9, E = 8.6e-41
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +LC++l++ l++GL+                          +ls+ +
   mKIAA0842   113    RLCEHLDHALLYGLQ--------------------------DLSSGY 133  

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                                          +vl+v++++++ ++qie L++     +
   mKIAA0842   134 -----------------------WVLVVHFTRREAIRQIEVLQH-----V 155  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   +t++gr+R  AW++laLne+sL+syl+l++++ +ll+kyY +nAl++++ 
   mKIAA0842   156 ATNLGRSR--AWLYLALNENSLESYLRLFQENLGLLQKYYVRNALVCSH- 202  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    +++ +++l+l+ gL++++F+Ldl+++   
   mKIAA0842   203 -DHL-TLFLTLVSGLEFIRFDLDLDAP    227  

PH: domain 1 of 1, from 840 to 941: score 66.0, E = 8.1e-16
                   *->vikeGwLlkkg.....gkkswkkRyfvLfndvLlyykdkk.kkpkgs
                      ++keG L+ k +++  gk+ wk +++vL n+ L+ y d+++  p  s
   mKIAA0842   840    ITKEGMLHYKAstsylGKEHWKACFVVLSNGILYQYPDRTdVIPLLS 886  

                   ipLsgiqvekvpdn...krkncFeirt.dretlllqaeseeerkeWvkai
                   +++ g q+  + ++++++r+++F+++  dr +l+l+a+se e+ +W++++
   mKIAA0842   887 VNMGGEQCGGCRRSnttDRPHAFQVILaDRPCLELSADSEAEMADWMQHL 936  

                   qsair<-*
                   ++a++   
   mKIAA0842   937 CQAVS    941  

//