hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm03159/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0840  ( 523 res)   mpm03159

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_CC   Leucine-rich repeat - CC (cysteine-containin   288.6    4.5e-82  10
FBOX     A Receptor for Ubiquitination Targets           45.4    7.4e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FBOX       1/1     149   189 ..     1    41 []    45.4  7.4e-09
LRR_CC     1/10    217   242 ..     1    26 []    32.6  5.4e-05
LRR_CC     2/10    243   268 ..     1    26 []    32.5  5.8e-05
LRR_CC     3/10    269   294 ..     1    26 []    30.9  0.00017
LRR_CC     4/10    303   328 ..     1    26 []     7.0       94
LRR_CC     5/10    329   354 ..     1    26 []    36.1  4.7e-06
LRR_CC     6/10    355   380 ..     1    26 []    34.5  1.5e-05
LRR_CC     7/10    381   406 ..     1    26 []    34.2  1.8e-05
LRR_CC     8/10    407   432 ..     1    26 []    40.4  2.5e-07
LRR_CC     9/10    433   458 ..     1    26 []    35.8  5.7e-06
LRR_CC    10/10    459   484 ..     1    26 []    32.8  4.8e-05

Alignments of top-scoring domains:
FBOX: domain 1 of 1, from 149 to 189: score 45.4, E = 7.4e-09
                   *->LPieileeIlskLdpkdllrlrkVsrkwrslidshdfwfkr<-*
                      LP++ + +I+s+L++  l+r+ +V+r+w++l  + ++w+ +   
   mKIAA0840   149    LPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTI    189  

LRR_CC: domain 1 of 10, from 217 to 242: score 32.6, E = 5.4e-05
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C +L+++ +sgC+++TD+gl+ +a++   
   mKIAA0840   217    CLMLETVIVSGCRRLTDRGLYTIAQC    242  

LRR_CC: domain 2 of 10, from 243 to 268: score 32.5, E = 5.8e-05
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      Cp L++L +sgC+ni++e+++ ++++   
   mKIAA0840   243    CPELRRLEVSGCYNISNEAVFDVVSL    268  

LRR_CC: domain 3 of 10, from 269 to 294: score 30.9, E = 0.00017
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      CpnL++Ld+sgCs++T+++l   a+    
   mKIAA0840   269    CPNLEHLDVSGCSKVTCISLTREASI    294  

LRR_CC: domain 4 of 10, from 303 to 328: score 7.0, E = 94
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                        ++++Ld+ +C  + Degl  +a     
   mKIAA0840   303    QISIRYLDMTDCFVLEDEGLHTIAAH    328  

LRR_CC: domain 5 of 10, from 329 to 354: score 36.1, E = 4.7e-06
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C++L++L L++C+++TDegl++L+ +   
   mKIAA0840   329    CTQLTHLYLRRCVRLTDEGLRYLVIY    354  

LRR_CC: domain 6 of 10, from 355 to 380: score 34.5, E = 1.5e-05
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C+++keL++s+C+ ++D gl+++ak+   
   mKIAA0840   355    CTSIKELSVSDCRFVSDFGLREIAKL    380  

LRR_CC: domain 7 of 10, from 381 to 406: score 34.2, E = 1.8e-05
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                        +L++L++ +C +iTD+g++++ak+   
   mKIAA0840   381    ESRLRYLSIAHCGRITDVGIRYVAKY    406  

LRR_CC: domain 8 of 10, from 407 to 432: score 40.4, E = 2.5e-07
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C +L++L+ +gC+ iTD+g+ +Lak+   
   mKIAA0840   407    CSKLRYLNARGCEGITDHGVEYLAKN    432  

LRR_CC: domain 9 of 10, from 433 to 458: score 35.8, E = 5.7e-06
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C++Lk+Ld+++C++++D+gl +La +   
   mKIAA0840   433    CTKLKSLDIGKCPLVSDTGLESLALN    458  

	[output cut off at A = 10 top alignments]
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