hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm03159/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0840  ( 523 res)   mpm03159

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
F-box    F-box domain                                    50.8      3e-11   1
LRR_1    Leucine Rich Repeat                             27.2    0.00038  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
F-box      1/1     146   191 ..     1    44 []    50.8    3e-11
LRR_1      1/10    219   244 ..     1    25 []     0.4  1.7e+03
LRR_1      2/10    245   270 ..     1    25 []     3.8  4.7e+02
LRR_1      3/10    271   293 ..     1    25 []     9.1       62
LRR_1      4/10    305   330 ..     1    25 []     1.5  1.1e+03
LRR_1      5/10    331   349 ..     1    25 []     3.5  5.2e+02
LRR_1      6/10    357   381 ..     1    25 []     5.8  2.2e+02
LRR_1      7/10    383   408 ..     1    25 []     2.1  8.7e+02
LRR_1      8/10    409   434 ..     1    25 []     4.6  3.5e+02
LRR_1      9/10    435   456 ..     1    25 []     3.4  5.3e+02
LRR_1     10/10    461   489 ..     1    25 []     4.7  3.3e+02

Alignments of top-scoring domains:
F-box: domain 1 of 1, from 146 to 191: score 50.8, E = 3e-11
                   *->lldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kll<
                      +++LPd+ + +I+s+L++++l+r+++V++rw++l+ +++lw+++ l 
   mKIAA0840   146    IDRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPrLWRtIRL  191  

                   -*
                     
   mKIAA0840     -    -    

LRR_1: domain 1 of 10, from 219 to 244: score 0.4, E = 1.7e+03
                   *->nLeeLdLsgCNpslsgs.....lppslglp<-*
                       Le++ +sgC ++l+ + +  +++    +p   
   mKIAA0840   219    MLETVIVSGC-RRLT-DrglytIAQ--CCP    244  

LRR_1: domain 2 of 10, from 245 to 270: score 3.8, E = 4.7e+02
                   *->nLeeLdLsgCNpslsgs...lppsl.glp<-*
                      +L+ L++sgC  ++s  ++ +    + +p   
   mKIAA0840   245    ELRRLEVSGC-YNIS-NeavFDV-VsLCP    270  

LRR_1: domain 3 of 10, from 271 to 293: score 9.1, E = 62
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nLe+Ld+sgC ++++ +++   +  +   
   mKIAA0840   271    NLEHLDVSGC-SKVT-CISL-TrEAS    293  

LRR_1: domain 4 of 10, from 305 to 330: score 1.5, E = 1.1e+03
                   *->nLeeLdLsgCNpslsgs.lppsl.glp<-*
                      ++++Ld+ +C   l++++l+    +++   
   mKIAA0840   305    SIRYLDMTDC-FVLEDEgLHTIAaHCT    330  

LRR_1: domain 5 of 10, from 331 to 349: score 3.5, E = 5.2e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L++L+L++C  +l+       +gl+   
   mKIAA0840   331    QLTHLYLRRC-VRLT------DeGLR    349  

LRR_1: domain 6 of 10, from 357 to 381: score 5.8, E = 2.2e+02
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      +++eL++s+C + +s ++    + +l    
   mKIAA0840   357    SIKELSVSDC-RFVS-DFGLReIaKLE    381  

LRR_1: domain 7 of 10, from 383 to 408: score 2.1, E = 8.7e+02
                   *->nLeeLdLsgCNpslsgs..lppsl.glp<-*
                      +L++L++ +C  +++ + ++    + ++   
   mKIAA0840   383    RLRYLSIAHC-GRIT-DvgIRYVAkYCS    408  

LRR_1: domain 8 of 10, from 409 to 434: score 4.6, E = 3.5e+02
                   *->nLeeLdLsgCNpslsgs.....lppslglp<-*
                      +L++L+ +gC   ++ +++ + l++  +++   
   mKIAA0840   409    KLRYLNARGC-EGIT-DhgveyLAK--NCT    434  

LRR_1: domain 9 of 10, from 435 to 456: score 3.4, E = 5.3e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L++Ld++ C  +l  s    l++l    
   mKIAA0840   435    KLKSLDIGKC--PLV-SDTG-LeSLA    456  

LRR_1: domain 10 of 10, from 461 to 489: score 4.7, E = 3.3e+02
                   *->nLeeLdLsgCNpslsgs...lpps.l.glp<-*
                      nL+ L+L +C  s++g +  + + ++ +l+   
   mKIAA0840   461    NLKRLSLKSC-ESITGQglqIVAAnCfDLQ    489  

//