hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02434/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0837  ( 376 res)   mbg02434

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
AMP-binding AMP-binding enzyme                            5.1      1e-07   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
AMP-binding   1/1       5   267 ..     1   377 []     5.1    1e-07

Alignments of top-scoring domains:
AMP-binding: domain 1 of 1, from 5 to 267: score 5.1, E = 1e-07
                   *->TYrELderanrlAaaLralGvgpGdrVaillpnspelvvailAvlka
                                   ++L+ + v                          
   mKIAA0837     5    -------------SYLLPQSV-------------------------- 12   

                   GaayvPldpsypaerlayiledsgakvlltddallalse.p.ppvdpddl
                      ++    ++ +  ++ + +d                 +  +p      
   mKIAA0837    13 -VYCHGGRVGFFQGDIRLLSDD----------------MkAlRP------ 39   

                   AyiiYTSGTTGkPKGVmltHrnlvnlvaala.rf.l.pddaervllllpp
                                             +  + +r+  +  d   +++ +  
   mKIAA0837    40 -------------------------TIFPVVpRLlNrMYD--KIFHQAD- 61   

                   llhfdgsvweifgpLlaGatlvlvpkfdryrdpealldliekykvTvlfl
                       + +  +++   +   +  + ++  r      ++d +          
   mKIAA0837    62 ----TSLKRWLLEFAAKRKQAEVRSGIIR---NNSIWDEL---------- 94   

                   vPtllrlllkapeedlssLrlvlsgGealppelarrlrerfgsggvrlvn
                      +++ + ++      ++r +++g+++ +p+++  lr+++g   +++++
   mKIAA0837    95 ---FFNKIQASL---GGHVRMIVTGAAPASPTVLGFLRAALG---CQVYE 135  

                   gYGpTEttvvatanppg.p.pgsiGrPlpgvevyvlDeeg.qpvppGvvG
                   gYG+TE+t ++t++ pg+ ++g++G Plp+  ++++D+e  ++     +G
   mKIAA0837   136 GYGQTECTAGCTFTTPGdWtSGHVGAPLPCNHIKLVDAEElNYWTCKGEG 185  

                   ELyirGwpgvarGYlnrPelTaerFvadgwgpGeRmYrTGDlgrwdpDGy
                   E++++G p+v++GYl+++++T+e+ ++dgw      ++TGD+g+w+p+G+
   mKIAA0837   186 EICVKG-PNVFKGYLKDEDRTKEALDSDGW------LHTGDIGKWLPEGT 228  

                   leilGRkDdqvKir.GerIepgEiEavLlahPgVaeAaV<-*
                   l i++Rk++++K+++Ge+++p+ iE+++ + + Va++ V   
   mKIAA0837   229 LKIIDRKKHIFKLAqGEYVAPEKIENIYIRSEPVAQIYV    267  

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