hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01048/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0835  ( 1129 res)   mfj01048

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2HC  Zinc finger, C2HC type                         393.7   1.9e-114   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2HC    1/7      67    97 ..     1    31 []    65.6  1.1e-15
zf-C2HC    2/7     481   511 ..     1    31 []    63.8  3.6e-15
zf-C2HC    3/7     525   554 ..     1    31 []    37.1  3.9e-07
zf-C2HC    4/7     801   831 ..     1    31 []    71.9  1.4e-17
zf-C2HC    5/7     845   875 ..     1    31 []    72.9  6.6e-18
zf-C2HC    6/7     894   924 ..     1    31 []    67.4  2.9e-16
zf-C2HC    7/7     947   977 ..     1    31 []    61.6  1.7e-14

Alignments of top-scoring domains:
zf-C2HC: domain 1 of 7, from 67 to 97: score 65.6, E = 1.1e-15
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      +l+CPtpGC+GsGHv+Gky++Hrsl++CPla   
   mKIAA0835    67    DLSCPTPGCTGSGHVRGKYSRHRSLQSCPLA    97   

zf-C2HC: domain 2 of 7, from 481 to 511: score 63.8, E = 3.6e-15
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      e+kCPtpGCdG+GHvtG y +HrslsGCP++   
   mKIAA0835   481    EIKCPTPGCDGTGHVTGLYPHHRSLSGCPHK    511  

zf-C2HC: domain 3 of 7, from 525 to 554: score 37.1, E = 3.9e-07
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      +lkCPtpGC+G+GHv++++++Hr +  C  +   
   mKIAA0835   525    VLKCPTPGCTGQGHVNSNRNTHRRPM-CFVK    554  

zf-C2HC: domain 4 of 7, from 801 to 831: score 71.9, E = 1.4e-17
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      +l+CPtpGCdGsGH+tG+y+sHrslsGCPla   
   mKIAA0835   801    LLTCPTPGCDGSGHITGNYASHRSLSGCPLA    831  

zf-C2HC: domain 5 of 7, from 845 to 875: score 72.9, E = 6.6e-18
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      +lkCPtpGCdGsGH+tG+y+sHrslsGCP+a   
   mKIAA0835   845    DLKCPTPGCDGSGHITGNYASHRSLSGCPRA    875  

zf-C2HC: domain 6 of 7, from 894 to 924: score 67.4, E = 2.9e-16
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      ++kCP+pGC G+GH++Gky+sHrs+sGCPla   
   mKIAA0835   894    LMKCPVPGCVGLGHISGKYASHRSASGCPLA    924  

zf-C2HC: domain 7 of 7, from 947 to 977: score 61.6, E = 1.7e-14
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                       ++CPtpGCdGsGH +G++ +HrslsGCP+a   
   mKIAA0835   947    GPTCPTPGCDGSGHANGSFLTHRSLSGCPRA    977  

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