hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg00280/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0832 ( 466 res) mbg00280 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- HOLI hormone ligand-binding domain in nuclear rec 149.4 3.7e-40 1 ZnF_C4 C4 zinc finger in nuclear hormone receptors 141.5 8.6e-38 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C4 1/1 133 204 .. 1 72 [] 141.5 8.6e-38 HOLI 1/1 278 436 .. 1 158 [] 149.4 3.7e-40 Alignments of top-scoring domains: ZnF_C4: domain 1 of 1, from 133 to 204: score 141.5, E = 8.6e-38 *->sepCaVCgdpAsGyHfGvlsCrACkaFFRRtvvlkkkYkCkknnnCe ++C+VCgd AsGyH+Gv sC+ACkaFF Rt++ +++Y+C++ n Ce mKIAA0832 133 KRLCLVCGDIASGYHYGVASCEACKAFFNRTIQGNIEYSCPATNECE 179 idkkgRnrCRaCRlkKClevGMnpe<-* i+k++R+ C+aCR+ KCl+vGM +e mKIAA0832 180 ITKRRRKSCQACRFMKCLKVGMLKE 204 HOLI: domain 1 of 1, from 278 to 436: score 149.4, E = 3.7e-40 *->ewwerdllltvewaksfpfFreLsleDqiiLLksfwfelllLesayr ++++r+l+ ++ wak++p+F+ Lsl+Dq++LL+s+w+e+l+L+ +yr mKIAA0832 278 DLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYR 324 sa.lkksdlllfpdgtyirpd...lf.pfldrildelv.plreLkltdeE s + + +l+ + d++++ ++++ + +l+ + +lv++ +++kl +eE mKIAA0832 325 SLsFED-ELVYADDYIMDEDQsklAGlLDLNNAILQLVkKYKSMKLEKEE 373 yalLkaillfnpagpglseegqeiveklqeklsnaLhdYylknypmpnyp ++ Lkai l n++ +++ +e+v+klq++l +aL+dY ++ ++p mKIAA0832 374 FVTLKAIALANSDSMHIED--VEAVQKLQDVLHEALQDYEAGQHM--EDP 419 sRfakLllllpslrkis<-* R +k+l+ lp+lr++s mKIAA0832 420 RRAGKMLMTLPLLRQTS 436 //