hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00280/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0832  ( 466 res)   mbg00280

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
zf-C4         Zinc finger, C4 type (two domains)        174.9    1.3e-48   1
Hormone_recep Ligand-binding domain of nuclear hormon   149.3    6.9e-41   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
zf-C4           1/1     134   209 ..     1    77 []   174.9  1.3e-48
Hormone_recep   1/1     281   461 ..     1   200 []   149.3  6.9e-41

Alignments of top-scoring domains:
zf-C4: domain 1 of 1, from 134 to 209: score 174.9, E = 1.3e-48
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv
                      +lC+VCGD ASGyHYGv +CE CK+FF R+iq+n++ YsC++ ++C+
   mKIAA0832   134    RLCLVCGDIASGYHYGVASCEACKAFFNRTIQGNIE-YSCPATNECE 179  

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   I+Kr+R+ CQ+CR+ KCL VGM ke+Vr +   
   mKIAA0832   180 ITKRRRKSCQACRFMKCLKVGMLKEGVRLD    209  

Hormone_recep: domain 1 of 1, from 281 to 461: score 149.3, E = 6.9e-41
                   *->frqlllivewaKslPfFkeLsleDQiiLLkhswlelllLrlayrsys
                      +r+l++i+ waK +P+F+ Lsl+DQ++LL+++w+e+l+L+  yrs s
   mKIAA0832   281    DRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLS 327  

                   lkkatasdtllfpdGtdipresl...gsselierifeflvklrvnilapl
                     +      l+++d++++++++ +  g  +l + i+ +++k +       
   mKIAA0832   328 FED-----ELVYADDYIMDEDQSklaGLLDLNNAILQLVKKYK------- 365  

                   reLkldeeEyalLkAIvlfnPsdvpgLsesareiveklqekylsaLlqyc
                    ++kl  eE++ LkAI l n+ d   +++     v+klq+ + +aL++y 
   mKIAA0832   366 -SMKLEKEEFVTLKAIALANS-DSMHIEDVE--AVQKLQDVLHEALQDYE 411  

                   llnypdtlssdgpsRFakLLlllpvlrsiskdllehlfflkqlfnvpkvp
                     ++      ++p R +k+L+ lp lr++s++  +h++ +k+ +   kvp
   mKIAA0832   412 AGQHM-----EDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEG---KVP 453  

                   p..Llkei<-*
                   +++L++e+   
   mKIAA0832   454 MhkLFLEM    461  

//