hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj18249/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0830  ( 591 res)   mfj18249

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
NUC      DNA/RNA non-specific endonuclease              -45.1     0.0016   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
NUC        1/1     152   354 ..     1   262 []   -45.1   0.0016

Alignments of top-scoring domains:
NUC: domain 1 of 1, from 152 to 354: score -45.1, E = 0.0016
                   *->rheyvlsYnrstrmPlWvaehitpesltsrkvv...lvepqLv..yp
                       + +++ Y++  r+P+ +a  ++ ++++sr+  +++l epq  ++  
   mKIAA0830   152    SERFATLYSPGHRIPVFSA--FRAARPASRSAEqrgLLEPQIDdpDS 196  

                   kteeaerksskFkpDtripeGkfraklsDYkgskvpsknGyDRGHLaPaa
                     ee+++  + + +++++  G+ +a ++DY++s       y  G L+P  
   mKIAA0830   197 NLEEVIDEANALTSVDNL--GSKQALNADYIDS------DYEIGQLYPFP 238  

                   dhkfSeqeamddTFylSNmvPQygdGfNrgaWa.yLEdfl.Relta...e
                   ++++     + +TF l+N vP++++  +r  W+ +L  +++R l+ + +e
   mKIAA0830   239 LNSDL----QMATFPLTNSVPMTQS--FRERWHmNLNSLMdRALIPhcsE 282  

                   yngvyVvsGPlflpnydgdgkklipWldevkyqviGitkknvavPTHffk
                    +++y+ +G++++    ++++k             G    +v++P   + 
   mKIAA0830   283 GKDLYILTGAVPS----EHRVK-------------G----KVTIPEFVWL 311  

                   vilaekaksetpelccealevaaFilPNepindespnhGkdESsWVEELL
                    +++ +          ++  + +Fi   + i++  +              
   mKIAA0830   312 AACCAVP---------GEGWAMGFIKHTQDIDVI-E-------------- 337  

                   tnfrVpVdeiErlTGLvFfrnldra<-*
                       V ++++E+l     +++ ++    
   mKIAA0830   338 ---DVMLRDLEKL-----LPHKPQL    354  

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