hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm05057/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0829 ( 1332 res) mpm05057 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- HEAT HEAT repeat 92.1 1.1e-23 11 UME UME (NUC010) domain -21.5 0.94 1 Adaptin_N Adaptin N terminal region -177.1 0.44 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- HEAT 1/11 145 181 .. 1 36 [] 21.8 0.016 HEAT 2/11 183 219 .. 1 36 [] 2.1 1.3e+02 HEAT 3/11 272 308 .. 1 36 [] 15.5 1.2 HEAT 4/11 310 347 .. 1 36 [] 0.2 2.3e+02 HEAT 5/11 352 388 .. 1 36 [] 22.0 0.014 UME 1/1 313 409 .. 1 113 [] -21.5 0.94 HEAT 6/11 532 567 .. 1 36 [] 1.1 1.7e+02 HEAT 7/11 616 652 .. 1 36 [] 7.8 20 HEAT 8/11 789 825 .. 1 36 [] 5.5 42 HEAT 9/11 954 989 .. 1 36 [] 12.2 4.7 Adaptin_N 1/1 489 1017 .. 1 630 [] -177.1 0.44 HEAT 10/11 1028 1064 .. 1 36 [] 2.7 1e+02 HEAT 11/11 1103 1139 .. 1 36 [] 12.3 4.6 Alignments of top-scoring domains: HEAT: domain 1 of 11, from 145 to 181: score 21.8, E = 0.016 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* ++ +++ ++l+ll+D++ eV+ A+++Lg l++++ mKIAA0829 145 DdSERKVVKMILRLLEDKNGEVQNLAVKCLGPLVSKV 181 HEAT: domain 2 of 11, from 183 to 219: score 2.1, E = 1.3e+02 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* e +++++ +l++ + ++ + R+ + L +++ l mKIAA0829 183 EyQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL 219 HEAT: domain 3 of 11, from 272 to 308: score 15.5, E = 1.2 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* ++++++l +ll l++p VR+ ++ aLg+l+ + mKIAA0829 272 VnFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 308 HEAT: domain 4 of 11, from 310 to 347: score 0.2, E = 2.3e+02 *->e.lldellplll.kllnDpdpeVReaAaeaLgalaevl<-* + + +l+++ll++l + ++ + ++ +++++a+++++ mKIAA0829 310 NiVFVDLIEHLLsELSKNDSMSTTRTYIQCIAAISRQA 347 HEAT: domain 5 of 11, from 352 to 388: score 22.0, E = 0.014 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* ++l++++pl++k +n +d+e Re +++a+ ++++ + mKIAA0829 352 GeYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 388 UME: domain 1 of 1, from 313 to 409: score -21.5, E = 0.94 *->fanfLqehiLGIlqvFssdlhdidgkteifeKkraLngIgfLiklag ++ ++ + s l+ d + + + I ++ + ag mKIAA0829 313 --------FVDLIEHLLSELSKND---SMSTTRTYIQCIAAISRQAG 348 gkhissalpqisacLqtaleipedaLqenalrcWhvLvrkLADvneeeLg + i +l +i+ + ++d L+e+++ + ++vr+ + e+ mKIAA0829 349 -HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC----PKEVY 393 slldqiiaillplwet<-* + ++ii i l+ + + mKIAA0829 394 PHVSTIINICLKYLTY 409 HEAT: domain 6 of 11, from 532 to 567: score 1.1, E = 1.7e+02 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* +++ +++ +l k ++ ++ + R+ +++ L +l++vl mKIAA0829 532 SqVP-NIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 567 HEAT: domain 7 of 11, from 616 to 652: score 7.8, E = 20 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* ++++ l+p+++ + +Dp +++ A+ ++l++v+ mKIAA0829 616 HpHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI 652 HEAT: domain 8 of 11, from 789 to 825: score 5.5, E = 42 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* + +d +l l l++ +d +V ++A++ L +la+v+ mKIAA0829 789 AaMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 825 HEAT: domain 9 of 11, from 954 to 989: score 12.2, E = 4.7 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* ++ l el ++l+++++p++eV+ aA +aLg+++ mKIAA0829 954 SgQL-ELKSVILEAFSSPSEEVKSAASYALGSISVGN 989 Adaptin_N: domain 1 of 1, from 489 to 1017: score -177.1, E = 0.44 *->ekkeitqelaeilnsfkddKkLdpykkkdavkKliy...limlGned e+++ + + l+ +k+ + v+ + +++ + +G+ + mKIAA0829 489 EENVKADVFHAYLSLLKQT---------RPVQSWLCdpdAMEQGDTP 526 isflfaevvklvas..kkdfelKrlgLRrmVYLylkllaeespDGkl.hl l+ +v + v +k+ +K + R+ ++ l +l ++ p G+l++ mKIAA0829 527 LTMLQSQVPNIVKAlhKQ-MKEKSVKTRQCCFNMLTELVNVLP-GALtQH 574 aiLatntikkDLqspNp..lirglALrtLssirvpe.......lardlap + + + i L+++ ++ + AL++L i +++ ++ +++l p mKIAA0829 575 IPVLVPGIIFSLNDKSSssNLKIDALSCLYVILCNHspqvfhpHVQALVP 624 dikkllvdespnpyVRKkAalailkLyrkdp..elvernglvedlkelLs ++ +++ d p + + A+l L ++ + ++ ++++ ++ +k+l mKIAA0829 625 PVVACVGD--PFYKITSEALLVTQQLVKVIRplDQPSSFDATPYIKDLFT 672 lDsnpgVvsaAVaaldeickqnpdllllfrDlklvplLvrfvrllrkllt + i + ++ + D + +++ ++ + mKIAA0829 673 ---------------CTIKRLKAADI----D--------Q--EVKERAIS 693 alsdlnewggnsvpqpfllvkLiklLrlylrkdlvepdprlGlngkdlse + +g +i + l+++l++ + mKIAA0829 694 C-------MG----------QII--CN--LGDNLGPD---------LSNT 713 rltfilqlvntkvelskvqhknvsnavlfelaltisdldsapelivlain + f++ l n + l+ ++ l +a+ +++d+ p ++ + mKIAA0829 714 LQIFLERLKNEITRLT-------TVKALTLIAGSPLKIDLRP-VLGEGVP 755 kLlvlLlssdpnlrYvaLrnlnkivmsekrpskeeglekavqrhrlkif. +L ++L + +++l+ +L +l+++ + + + l +a+ + l+ ++ mKIAA0829 756 ILASFLRKNQRALKLGTLSALDILIK--NYSDS---LTAAMIDAVLDELp 800 fclstdddisIrlraLdlLykL..vdesNvke....ivkeLkeyveeadn ++s + d ++++ a+ L++L +v s+++ +++i++eL v + mKIAA0829 801 PLIS-ESDMHVSQMAISFLTTLakVYPSSLSKisgsILNELIGLVRSPLL 849 dehedtfvkiavvaiirlacekdnYqfptdaewcidvLleLLkltagsyv + + a+ + + +++ t+ ++d Ll++L mKIAA0829 850 Q--G--GALSAMLDFFQALVVT-----GTNNLGYMD-LLRMLT------- 882 vaeaivvqiidiirkyPelreyaVsqiitlLaalle.........sies. + ++++ + + + ++ + +++++++ L + ++++++ +++i++ mKIAA0829 883 -GPVYSQ--STALTHKQSYY--SIAKCVAALTRACPkegpavvgqFIQDv 927 .....mpearaaaiWilGEygelipdiapceesepsevesdidllreiae +++++ + +r a+ lGE g++i ++ + l++++ mKIAA0829 928 knsrsTDSIRLLALLSLGEVGHHIDLSGQ-------------LELKSVIL 964 .nfslenlevraqlLtalvKLgltkpdikqQeeiqpveeliqsvlslaln + fs+ + ev+ ++ al g+ + + + e + vl+ ++ mKIAA0829 965 eAFSSPSEEVKSAASYAL---GSISVGN--------LPEYLPFVLQEITS 1003 ssdnelElRDRAreylrllslad<-* + r yl l sl + mKIAA0829 1004 QPK---------RQYLLLHSLKE 1017 HEAT: domain 10 of 11, from 1028 to 1064: score 2.7, E = 1e+02 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* +++++++ lllk+++ ++ R +ae+Lg+l + mKIAA0829 1028 KpYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID 1064 HEAT: domain 11 of 11, from 1103 to 1139: score 12.3, E = 4.6 *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-* ++ll++ + +lk l+Dpd +VR+ A+ ++ + a + mKIAA0829 1103 DpLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1139 //