hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03869/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0828  ( 478 res)   mbg03869

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ahcY     ahcY: adenosylhomocysteinase                   652.5   2.3e-192   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ahcY       1/1      53   470 ..     1   422 []   652.5 2.3e-192

Alignments of top-scoring domains:
ahcY: domain 1 of 1, from 53 to 470: score 652.5, E = 2.3e-192
                   *->YkvkDisLAaeGrkkIewAereMPVLmriReefseekPLkGvriaac
                      ++vk i  A++Gr++Ie+Ae+eMP Lm++R++ + ekPL+G++i++c
   mKIAA0828    53    FCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGC 99   

                   LHltvkTAvLieTLkagGAEValtacNplSTQDdvAAAlakaaGipVyAw
                    H+t++TAvL+eTL a+GA  +++acN++ST  +vAAAla+ +G pV+Aw
   mKIAA0828   100 THITAQTAVLMETLGALGAQCRWAACNIYSTLNEVAAALAE-SGFPVFAW 148  

                   rGetnEeYyealeqvldafkddkepniiiDDGaDlifLlhkeerpellek
                   +Ge++ ++++++ + +    ++ +pn+i+DDG+Dl+  + k ++p +  k
   mKIAA0828   149 KGESEDDFWWCIDRCVN--VEGWQPNMILDDGGDLTHWIYK-KYPNMFKK 195  

                   iiGgsEETTTGVirLramereGvLkfPviaVNDayTKylFDNrYGTGqSt
                   i+G+ EE  TGV+rL+++ ++G+L +P+++VND++TK +FDN+Y +++S 
   mKIAA0828   196 IKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESI 245  

                   iDGIlRATnlLiAGKtvVVaGYGWcGkGiAmrarGlGArViVTEvDPIrA
                   +DG +R+T+++ +GK vVV+GYG +GkG+ ++++ +G  V VTE+DPI A
   mKIAA0828   246 LDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICA 295  

                   LeAaMDGFrVmtmeeAakiGDifiTaTGnkdvIreeHfekMKDgAIlaNa
                   L+A MDGFr +++ e + + Di+iT TGnk+v+ +eH+  MK+ +I++N 
   mKIAA0828   296 LQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNM 345  

                   GHFdvEIdvkaLeelAkekrevrpqvdeYkLkdGrriyLLaEGRLVNLaa
                   GH + EIdv++L     +  +vr qvd  + +dG+ri LLaEGRL+NL +
   mKIAA0828   346 GHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSC 395  

                   AeGHPseVMdmSFanQalAaeyllkn.hdklepgVyrlPkelDemVArlk
                    +  P +V +   + QalA ++l   +++++ + Vy lPk++De VA+l+
   mKIAA0828   396 ST-VPTFVLSITATTQALALIELYNApEGRYKQDVYLLPKKMDEYVASLH 444  

                   LealGieideLTeeQkkYLesweeGt<-*
                   L +   +++eLT eQ+kYL+  ++G+   
   mKIAA0828   445 LPTFDAHLTELTDEQAKYLGLNKNGP    470  

//