hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic38093/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0822  ( 1574 res)   mic38093

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA      ATPases associated with a variety of cellula    85.2      8e-21   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA        1/2     461   645 ..     1    92 []    46.8  2.8e-09
AAA        2/2    1267  1446 ..     1    92 []    40.2  2.7e-07

Alignments of top-scoring domains:
AAA: domain 1 of 2, from 461 to 645: score 46.8, E = 2.8e-09
                   *->pgevvllvGppGsGKTTlaralarllgp...................
                       g+++++ G +G+GK+Tl++ l +l+ p++++ +  +++ ++  + +
   mKIAA0822   461    EGQITAVLGHSGAGKSTLLNILSGLSVPtkgsvtiynnnlsemadle 507  

                   gviyidge..........................................
                    +++i+g   + + + +    +++ +   + ++   ++ +++ ++   + 
   mKIAA0822   508 NILRIAGVcpqanvqfdfltvrenlrlfakirgippqdvekevqrvllel 557  

                   ..............ggqrirlalalark...dvlllDEitslld......
                   + ++ ++   ++ +ggq+ +l + +a  +++ + llDE+t+ ld  ++++
   mKIAA0822   558 emkniqnilaqnlsGGQKRKLTFGIAILgdsQIFLLDEPTAGLDpfsrhr 607  

                   ...........vtviattndldpallrrrfdrrivllril<-*
                     +++++++ ++ v++ t+ +++ + +  +dr++++ +++   
   mKIAA0822   608 vwnllkerradRVVLFSTQ-FMDEADI-LADRKVFISNGR    645  

AAA: domain 2 of 2, from 1267 to 1446: score 40.2, E = 2.7e-07
                   *->pgevvllvGppGsGKTTlaralarllgp..gviyidge.........
                      +ge+++l G +G+GK+T ++++ +  + + g +++ g+++++  +  
   mKIAA0822  1267    KGEILGLLGHNGAGKSTSLKMISGDTKVtaGQVLLKGSregdtpgfl 1313 

                   ...............................ggqrirlalalark.....
                   +   +++    +   +++ +     ++ +++ ++ +  +la a k +++ 
   mKIAA0822  1314 gycpqenalwpnltvkehleifaavrglrksHAAVAITRLADALKlqdql 1363 

                   .........................dvlllDEitslld............
                   +++ ++ + + +++     +  +++++lllDE+ + ld +++++  +  +
   mKIAA0822  1364 kspvktlsegvkrklcfvlsilgnpSILLLDEPSTGLDpegqqqiwqair 1413 

                   .......vtviattndldpallrrrfdrrivllril<-*
                      ++ ++  ++tt+    ++ + ++++r+ +l ++   
   mKIAA0822  1414 aiikntdRGALLTTH---YMAEAEALCDRVAILVSG    1446 

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