hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mic/mic38093/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0822 ( 1574 res) mic38093 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ABC_tran ABC transporter 344.9 8.8e-100 2 MMR_HSR1 GTPase of unknown function -21.9 0.67 1 SMC_N RecF/RecN/SMC N terminal domain -116.9 0.03 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- MMR_HSR1 1/1 463 563 .. 1 140 [] -21.9 0.67 ABC_tran 1/2 462 644 .. 1 206 [] 181.5 1.4e-50 SMC_N 1/1 448 647 .. 1 243 [] -116.9 0.03 ABC_tran 2/2 1268 1446 .. 1 206 [] 167.9 1.7e-46 Alignments of top-scoring domains: MMR_HSR1: domain 1 of 1, from 463 to 563: score -21.9, E = 0.67 *->lrvaivGrPNVGKSTLiNaLtgk.............kraiVsdyPGt a+ G + +GKSTL+N L+g + +++++ + +++ ++ +d mKIAA0822 463 QITAVLGHSGAGKSTLLNILSGLsvptkgsvtiynnNLSEMADLE-- 507 TrdpnegrveldgrqiilvDTPGiiegaskgegelgertleaieeaDlil + +++ ++G+ + a + +l ++e++ l mKIAA0822 508 --N----ILR----------IAGVCPQANVQFD-----FLTVRENLRLFA 536 fV..vDasegltedytieeDleiadllydeerernleltLqelekkgkPv ++++ ++ e++++ +L ele k+ + mKIAA0822 537 KIrgIPPQD----------------------VEKEVQRVLLELEMKN--I 562 ilvlNKiD<-* mKIAA0822 563 -------Q 563 ABC_tran: domain 1 of 2, from 462 to 644: score 181.5, E = 1.4e-50 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevvalvGpNGaGKSTLLklisGllqiPdrteGeilidpGedltdls G+++a++G++GaGKSTLL+++sGl P t+G+++i +++l ++ mKIAA0822 462 GQITAVLGHSGAGKSTLLNILSGLSV-P--TKGSVTIY-NNNL--SE 502 RF xxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lealrklgr.igvvpQdpqlflnptlTvrenlafglrlkgplekeerdef +++l + r gv+pQ + +f +lTvrenl++++ + g++ + mKIAA0822 503 MADLENILRiAGVCPQANVQF--DFLTVRENLRLFAKIRGIPPQD----- 545 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx adarveeaLervGladlldrlpqglDtlgdgggtLSGGqkQRvalARaLl +++v+ +L ++ ++++ + l+ +LSGGqk+++ a+l mKIAA0822 546 VEKEVQRVLLELEMKNIQNILA----------QNLSGGQKRKLTFGIAIL 585 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tkpklLlLDEPTagLDpasraqllellrelrqrggtvllitHdlefvdrl ++ + lLDEPTagLDp sr ++++ll+e r+ + vl+ t+ ++++d l mKIAA0822 586 GDSQIFLLDEPTAGLDPFSRHRVWNLLKERRA-DRVVLFSTQFMDEADIL 634 RF xxxxxxxxxx adrilvlenG<-* adr + ++nG mKIAA0822 635 ADRKVFISNG 644 SMC_N: domain 1 of 1, from 448 to 647: score -116.9, E = 0.03 RF xxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxx *->ylkrielegFKSYagktiigpFspg.FtaIvGPNGSGKSNiiDAIlF +++ + k ++++ +g++ta+ G+ G GKS ++ + mKIAA0822 448 KIEAL----------KDLTLDIYEGqITAVLGHSGAGKSTLLNIL-- 482 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx VLGersakkLRaeklsdLIhaGsksgasvnsAeVtitFlvqkivdnedkk s+ + +++Vti+ ++++ mKIAA0822 483 -----SG-----------LSV-P------TKGSVTIY---NNNLSEMADL 506 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx hiNSpflpideeeevsItRrvyrdGdqYSeYyINGknvtkIkdvseLLes I R +++ ++++ +v+ + + + mKIAA0822 507 --------------ENILRIAGVCPQ--ANVQFDFLTVRE--NLRLFAKI 538 RF xxxxxx xxxxxxx xxxxxxxxxxxx aGIske........................nLSGGEK.tLaALALlFAQG GI + + +++ ++ +++++ ++ ++ + +nLSGG+K++L+ F mKIAA0822 539 RGIPPQdvekevqrvllelemkniqnilaqNLSGGQKrKLT-----FG-- 581 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx EyliqkykPaPFYvlDEiDAALDeaNvsrvAnyiktelsknaQFIVIslR i + +++lDE A LD+ + rv n++k e++ + V+ + mKIAA0822 582 ---IAILGDSQIFLLDEPTAGLDPFSRHRVWNLLK-ERRADR---VVLFS 624 RF xxxxxxxxxxx xxxxxxxxxxx eemfekAdrlv..Gvymvengvst<-* +++ +Ad l ++ v+ ng + mKIAA0822 625 TQFMDEADILAdrKVFI-SNGRLK 647 ABC_tran: domain 2 of 2, from 1268 to 1446: score 167.9, E = 1.7e-46 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevvalvGpNGaGKSTLLklisGllqiPdrteGeilidpGedltdls Ge+++l+G+NGaGKST Lk+isG ++ t+G++l+ G + d + mKIAA0822 1268 GEILGLLGHNGAGKSTSLKMISGDTK-V--TAGQVLLK-GSREGDTP 1310 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lealrklgrigvvpQdpqlflnptlTvrenlafglrlkgplekeerdefa +g++pQ++ l+ p+lTv e+l +++ g ++ + a mKIAA0822 1311 GF-------LGYCPQENALW--PNLTVKEHLEIFAAVRGLRKSH-----A 1346 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx darveeaLervGladlldrlpqglDtlgdgggtLSGGqkQRvalARaLlt ++ +++ + l d l++++ +tLS G k++++ +l mKIAA0822 1347 AVAITRLADALKLQDQLKSPV----------KTLSEGVKRKLCFVLSILG 1386 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxx kpklLlLDEPTagLDpasraqllellrelrqr.ggtvllitHdlefvdrl +p +LlLDEP +gLDp++++q+++++r++ +++ ++ ll+tH + +++ l mKIAA0822 1387 NPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNtDRGALLTTHYMAEAEAL 1436 RF xxxxxxxxxx adrilvlenG<-* +dr+++l G mKIAA0822 1437 CDRVAILVSG 1446 //