hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08158/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0821  ( 1406 res)   mbg08158

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
OLF      Olfactomedin-like domains                      465.6   2.4e-135   1
GPS      G-protein-coupled receptor proteolytic site     98.2    9.7e-25   1
HormR    Domain present in hormone receptors             86.2    3.8e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
OLF        1/1      77   333 ..     1   349 []   465.6 2.4e-135
HormR      1/1     411   476 ..     1    89 []    86.2  3.8e-21
GPS        1/1     732   784 ..     1    51 []    98.2  9.7e-25

Alignments of top-scoring domains:
OLF: domain 1 of 1, from 77 to 333: score 465.6, E = 2.4e-135
                   *->giLagVskPvllkesekiagksGaWmkDplpnstkTkkrvWvmDgva
                      g L  V +P    ese   ++sGaW+kDpl++     +r++vm++ +
   mKIAA0821    77    GTLQKVLEPTSTHESE---HQSGAWCKDPLQAG----DRIYVMPWIP 116  

                   DGrvlrvvrEYssmsdfldgknkikykLphLiKNKLNNTFalsGTGvVVY
                     +++++++EY s  d  + + +++y+Lp           +++GTG+VVY
   mKIAA0821   117 --YRTDTLTEYASWEDYVAARHTTTYRLPN----------RVDGTGFVVY 154  

                   nGsLYFnkfeSrsivRyeLeTgvvkkeellpeAgYndrfpYPDHTFEECN
                   +G+ ++nk+++r+iv+y+L+T+++++e  ++ A+Y+d++pY         
   mKIAA0821   155 DGAVFYNKERTRNIVKYDLRTRIKSGETVINTANYHDTSPY--------- 195  

                   ATDRHVWLawgghsDiDLaVDEnGLWvIYATEqnaGkIVisKlnPasLev
                           +wgg++DiDLaVDEnGLWvIYATE n+G  V+s+lnP++L+ 
   mKIAA0821   196 --------RWGGKTDIDLAVDENGLWVIYATEGNNGRLVVSQLNPYTLRF 237  

                   entWnTeynKrsaanAFiICGvLYvvkSvYEDDDaeslgtkitYaYdTnt
                   e+tW+T y+Krsa+nAF++CGvLYv++SvY DDD e+ g+ ++Ya++Tn+
   mKIAA0821   238 EGTWETGYDKRSASNAFMVCGVLYVLRSVYVDDDSEAAGNRVDYAFNTNA 287  

                   PVFSFLSFViNFLGqFLLGYPVFLTEqSLKVEKRqKTEKSRiLRSRENST
                                                                     
   mKIAA0821     - -------------------------------------------------- -    

                   LiRPPigkeklldipfeNkYqyismLdYNPlDrkLYawdNghllkYdvkL
                         + e++++  f+N+Yq +s++dYNP+D+ LY+w+N+ ++ Y++ +
   mKIAA0821   288 ------NREEPVSLAFPNPYQFVSSVDYNPRDNQLYVWNNYFVVRYSLEF 331  

                   ee<-*
                   ++   
   mKIAA0821   332 GP    333  

HormR: domain 1 of 1, from 411 to 476: score 86.2, E = 3.8e-21
                   *->tdlgCpatwDgiiCWpsTpaGqlvavpCPeyfsgfsnktggNrtqGn
                      ++l+C++ + + ++Wp+T++G+lv++pCP++++g+            
   mKIAA0821   411    PELFCEPREVRRVQWPATQQGMLVERPCPKGTRGI------------ 445  

                   asRnCtedtGvGgWsepfpgaeSnrtWpnysnCtsndyeelk<-*
                   as +C++ +  G W++ +         p++snCts+++++     
   mKIAA0821   446 ASFQCLPAL--GLWNPRG---------PDLSNCTSPWVNQVA    476  

GPS: domain 1 of 1, from 732 to 784: score 98.2, E = 9.7e-25
                   *->snpiCvfWdese...tgeWstrGCelvetnkpthttCsCnHLTsFAv
                      +n++C+fW++se++ +g+Wst+GC+lve nk thttC C+HLT+FAv
   mKIAA0821   732    FNANCSFWNYSErsmLGYWSTQGCRLVESNK-THTTCACSHLTNFAV 777  

                   Lmdvspn<-*
                   Lm+++++   
   mKIAA0821   778 LMAHREI    784  

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