hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg08158/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0821 ( 1406 res) mbg08158 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Latrophilin Latrophilin Cytoplasmic C-terminal region 885.7 1.4e-262 1 OLF Olfactomedin-like domain 479.6 2.6e-140 1 7tm_2 7 transmembrane receptor (Secretin family 355.8 4.8e-103 1 Gal_Lectin Galactose binding lectin domain 122.3 9e-33 1 GPS Latrophilin/CL-1-like GPS domain 104.6 1.9e-27 1 HRM Hormone receptor domain 74.7 1.9e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Gal_Lectin 1/1 1 68 [. 1 85 [] 122.3 9e-33 OLF 1/1 77 333 .. 1 294 [] 479.6 2.6e-140 HRM 1/1 412 472 .. 1 76 [] 74.7 1.9e-18 GPS 1/1 732 784 .. 1 55 [] 104.6 1.9e-27 7tm_2 1/1 791 1038 .. 1 296 [] 355.8 4.8e-103 Latrophilin 1/1 1048 1406 .] 1 404 [] 885.7 1.4e-262 Alignments of top-scoring domains: Gal_Lectin: domain 1 of 1, from 1 to 68: score 122.3, E = 9e-33 *->LsCpgGqkIisIkfASFGRtpdgvCgsdpaqfsngsChaskSysive A++GRt+d++C++dp+q++n++C+++++++i++ mKIAA0821 1 --------------ANYGRTDDKICDADPFQMENVQCYLPDAFKIMS 33 kkCvGkssCtVvVsssvFgskgDPCpgtlKyLaVeyiC<-* ++C+++++C+Vv++s++F+ DPCpgt+KyL+V+y C mKIAA0821 34 QRCNNRTQCVVVAGSDAFP---DPCPGTYKYLEVQYDC 68 OLF: domain 1 of 1, from 77 to 333: score 479.6, E = 2.6e-140 *->giLagVskPvllkeseKgiagksGaWmkDplpnstkTkkrvWvmDgv g L V +P ese ++sGaW+kDpl++ +r++vm++ mKIAA0821 77 GTLQKVLEPTSTHESE----HQSGAWCKDPLQAG----DRIYVMPWI 115 aDGrvlrvvrEYssmsdfldgknkikykLphLiKNKLNNTFalsGTGvVV + +++++++EY s d + + +++y+Lp +++GTG+VV mKIAA0821 116 P--YRTDTLTEYASWEDYVAARHTTTYRLPN----------RVDGTGFVV 153 YnGsLYFnkfeSrsivRyeLeTgvvkkeellpeAgYndrfpYPDHTFEEC Y+G+ ++nk+++r+iv+y+L+T+++++e ++ A+Y+d++pY mKIAA0821 154 YDGAVFYNKERTRNIVKYDLRTRIKSGETVINTANYHDTSPY-------- 195 NATDRHVWLawgghsDiDLaVDEnGLWvIYATEqnaGkIVisKlnPasLe +wgg++DiDLaVDEnGLWvIYATE n+G V+s+lnP++L+ mKIAA0821 196 ---------RWGGKTDIDLAVDENGLWVIYATEGNNGRLVVSQLNPYTLR 236 ventWnTeynKrsaanAFiICGvLYvvkSvYEDDDaeslgtkitYaYdTn e+tW+T y+Krsa+nAF++CGvLYv++SvY DDD e+ g+ ++Ya++Tn mKIAA0821 237 FEGTWETGYDKRSASNAFMVCGVLYVLRSVYVDDDSEAAGNRVDYAFNTN 286 tgkeklldipfeNkYqyismLdYNPlDrkLYawdNghllkYdvkLee<-* ++ e++++ f+N+Yq +s++dYNP+D+ LY+w+N+ ++ Y++ +++ mKIAA0821 287 ANREEPVSLAFPNPYQFVSSVDYNPRDNQLYVWNNYFVVRYSLEFGP 333 HRM: domain 1 of 1, from 412 to 472: score 74.7, E = 1.9e-18 *->glgCpatwDgivCWPrtpaGqlvvvpCPdyfsGfnydttgedfgnay +l+C++ + v+WP+t+ G+lv++pCP++++G+ a+ mKIAA0821 412 ELFCEPREVRRVQWPATQQGMLVERPCPKGTRGI-----------AS 447 RnCtenGwwerhpsnwpwpnysaCtsney<-* +C++ + + n+ +p++s+Cts++ mKIAA0821 448 FQCLPALGLW----NPRGPDLSNCTSPWV 472 GPS: domain 1 of 1, from 732 to 784: score 104.6, E = 1.9e-27 *->tnpiCvfWdesslestgvWstdrGCevveenkpshttCsCnHLTtFA +n++C+fW++s+++++g+Wst +GC++ve nk +httC C+HLT+FA mKIAA0821 732 FNANCSFWNYSERSMLGYWST-QGCRLVESNK-THTTCACSHLTNFA 776 vlmdvppn<-* vlm+++++ mKIAA0821 777 VLMAHREI 784 7tm_2: domain 1 of 1, from 791 to 1038: score 355.8, E = 4.8e-103 *->lllLkviytVGyslSSLvaLllAiaifllfRkLhCtRnyIHlNLfas llL+vi++VG+ +S Lv+L+++i +f+++R L+ +Rn+IH+NL++ mKIAA0821 791 ELLLSVITWVGIVIS-LVCLAICISTFCFLRGLQTDRNTIHKNLCIN 836 fiLralsfLikdavlfnsvglseadqlsweeslhcsasagkitmivvVgC ++L++l+fL+++++++ +v+ C mKIAA0821 837 LFLAELLFLVGIDKTQYEVA-----------------------------C 857 kvvavflhYfflaNFfWmLVEGlYLhtllvvtvevffserkrfwwYlliG ++a++lhYffla+F W+++EG++L++ll vevf se +r ++Y+l G mKIAA0821 858 PIFAGLLHYFFLAAFSWLCLEGVHLYLLL---VEVFESEYSRTKYYYLGG 904 WGvPavfvgiwaivrpdkwagygnegCCWlsnedngyfwWiikGPvllvI +++Pa++vgi+a+++++ +yg+e+ CWl+ ++yf+W++ GPv +vI mKIAA0821 905 YCFPALVVGIAAAIDYR---SYGTEKACWLRV--DNYFIWSFIGPVSFVI 949 lvNfilFinilriLvqKlridkslspqmgetdqyrkkrlakstLlLlPLL +vN++++ +l ++++ + l+p+ +++d+++ ++a ++++Ll+LL mKIAA0821 950 VVNLVFLMVTLHKMIRSSS---VLKPDSSRLDNIK--SWALGAIALLFLL 994 GitwvlflfapeddsqGvssivflylfliLnSfQGffVavlYCFlNgEV< G+tw ++l++++ s+v++ylf+ +n fQG f++v++C l+++V mKIAA0821 995 GLTWAFGLLFINK-----ESVVMAYLFTTFNAFQGVFIFVFHCALQKKV 1038 -* mKIAA0821 - - Latrophilin: domain 1 of 1, from 1048 to 1406: score 885.7, E = 1.4e-262 *->hihccSllPrgsPrSalkeSskdsgkrsgSgdPlryslGsqSRIRRM h +cc P g + +lk S +s r+ g +qSRIRRM mKIAA0821 1048 HSYCCIRSPPGGTHGSLKTSAMRSNTRYYTG--------TQSRIRRM 1086 WNDTVRKQsESSFiaGDINStatLNrGamgNhLLtNplLrPhGtnnPYNT WNDTVRKQ+ESSF+aGDINSt+tLNrG+mgNhLLtNp+L+P+G+++PYNT mKIAA0821 1087 WNDTVRKQTESSFMAGDINSTPTLNRGTMGNHLLTNPVLQPRGGTSPYNT 1136 LLAEsvvcNapSapvFNspgsllePKHsLnnaRdtSaMDTLPLNGNFnNS L+AEsv++N++S+pvFNspgs++ePKH+L ++R++++MDTLPLNGNFnNS mKIAA0821 1137 LIAESVGFNPSSPPVFNSPGSYREPKHPL-GGREACGMDTLPLNGNFNNS 1185 YSLrsGdYhlsdGvqvvDRGlnlndAtAfEKmIisELvhNYiPSYLNlrg YSLrsGd++++dG+++++RG+nl+dA+AfEKmIisELvhN Nlrg mKIAA0821 1186 YSLRSGDFPPGDGGPEPPRGRNLADAAAFEKMIISELVHN------NLRG 1229 rSseakrlelekpVkpvigGssSEDdAivlDdAslFnHedslgLELlhke +S++ak++++e+pV+pv+g +SED+A++++ A d++++ELl+k+ mKIAA0821 1230 ASGGAKGPPPEPPVPPVPG--VSEDEAGGPGSA------DRAEIELLYKA 1271 leaPLLppRvySvENHqLYqsdRRRiPkKvKPdeseSfvaeltaeadedl le+PLL+pR++Sv LYqsd + deseS++ae++a++++++ mKIAA0821 1272 LEEPLLLPRAQSV----LYQSD-----L----DESESCTAEDGATSRPLS 1308 qSPnRDSLYtSmpnLrDsPsypesspetqaEdLsPpppAkcGdeeDiYYk ++P+RDSLY+S++nLrDsPsyp+sspe+++E+L+PpppA++G++e iYY+ mKIAA0821 1309 SPPGRDSLYASGANLRDSPSYPDSSPEGPNEALPPPPPAPPGPPE-IYYT 1357 SmPPnLgARnHvHqLqtYYQvsRGssdGYivppnkeGtiPeGSSdvREGq S+PP+L+ARn +Lq+YYQv+R+s++GY+++p++eG++P+G d Gq mKIAA0821 1358 SRPPALVARN---PLQGYYQVRRPSHEGYLAAPSLEGPGPDG--D---GQ 1399 mqLVTSL<-* mqLVTSL mKIAA0821 1400 MQLVTSL 1406 //