hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06229/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0820  ( 452 res)   mbg06229

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
GED       Dynamin GTPase effector domain                126.7    4.1e-34   1
PH        PH domain                                      25.6     0.0011   1
Dynamin_M Dynamin central region                        -73.9      1e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Dynamin_M   1/1       1   116 [.     1   299 []   -73.9    1e-05
PH          1/1     107   210 ..     1    92 []    25.6   0.0011
GED         1/1     237   328 ..     1    98 []   126.7  4.1e-34

Alignments of top-scoring domains:
Dynamin_M: domain 1 of 1, from 1 to 116: score -73.9, E = 1e-05
                   *->avDiLrNrViPLkkGYmgVvNRGQqDIqekkSlteALqkErkFFenH
                                                                     
   mKIAA0820     -    ----------------------------------------------- -    

                   PsYrtLadrggaTvPyLAkkLtqeLvsHIrktLPdLenqInetlqqtekE
                                                                     
   mKIAA0820     - -------------------------------------------------- -    

                   LqkYGadipedeaeKtafLlqkItaFnqdiislieGeekevstnElrgGa
                                                                     
   mKIAA0820     - -------------------------------------------------- -    

                   rIryiFhewfghllesfdpdeklirsdIrtaernyrGrelpLFvpykaFE
                                                    n++G++ +LF+p++aFE
   mKIAA0820     1 ---------------------------------NIHGIRTGLFTPDMAFE 17   

                   viVKkQIkrLeEPalkcvelVteelrkifhqcsNstkefsrFpnLrraak
                   +iVKkQI++L++P+lk v+lV++el++++++c+   k++++Fp+L+++++
   mKIAA0820    18 AIVKKQIVKLKGPSLKSVDLVMQELINTVKKCT---KRLANFPRLCEETE 64   

                   ekiedilreqeepaekmIrllfdmEqiyyntdhpyfiglqkarekeaeke
                   +++ +++re+e +++ +++ll+d++ +y+nt+h++fig+++a++++ +  
   mKIAA0820    65 RIVANHIREREGKTKDQVLLLIDIQVSYINTNHEDFIGFANAQQRSSQVH 114  

                   kk<-*
                   kk   
   mKIAA0820   115 KK    116  

PH: domain 1 of 1, from 107 to 210: score 25.6, E = 0.0011
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk..kkpkgsipLs
                        ++  ++kk+ +++   R  +L+ +++ + k+++++k++k+++pL+
   mKIAA0820   107    QQRSSQVHKKSTIGNQVIRKGWLTVSNIGIMKKDDeeKEKKYMLPLD 153  

                   giqvekvpdn..krkncFeirt.dr.......etlllqaeseeerkeWvk
                   +++v++v+++    k++F + ++++++  ++ + l+l+++s+e+ ++W +
   mKIAA0820   154 NLKVRDVEKGfmSSKHVFALFNtEQrnvykdyRFLELACDSQEDVDSWKA 203  

                   aiqsair<-*
                   ++ +a     
   mKIAA0820   204 SLLRAGV    210  

GED: domain 1 of 1, from 237 to 328: score 126.7, E = 4.1e-34
                   *->qeeseleeIklllkSYfnivrktladqvPKaImyllvnefKdslqnF
                      q e+++e+I++l++SY++i+ k ++d +PK Im+l++n++Kd++++ 
   mKIAA0820   237    QLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINS- 282  

                   QKellakLykPrakelfdeLLeEspeiaskRkelkkrLerLkkArqiise
                     ella+Ly    +e+++ L+eEs e a++R e+ +++ +Lk+A  ii +
   mKIAA0820   283 --ELLAQLYS---SEDQNTLMEESAEQAQRRDEMLRMYQALKEALAIIGD 327  

                   v<-*
                   +   
   mKIAA0820   328 I    328  

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