hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02936/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0818  ( 600 res)   mbg02936

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EGF_Lam  Laminin-type epidermal growth factor-like do   187.0    1.8e-51   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF_Lam    1/5     202   249 ..     1    42 []    46.4  3.8e-09
EGF_Lam    2/5     252   296 ..     1    42 []    46.8  2.9e-09
EGF_Lam    3/5     299   344 ..     1    42 []    50.7  1.9e-10
EGF_Lam    4/5     347   395 ..     1    42 []    25.3   0.0084
EGF_Lam    5/5     398   447 ..     1    42 []    49.7    4e-10

Alignments of top-scoring domains:
EGF_Lam: domain 1 of 5, from 202 to 249: score 46.4, E = 3.8e-09
                   *->CdCnlpppvG......Cdp.tGqClnCkpnttGGrrCdderCapGyy
                      C+C+    vG+ + ++C+++tGqC+ C  +++G  +Cd   C++G+y
   mKIAA0818   202    CNCS---EVGsldvkrCNQtTGQCD-CHVGYQG-LHCD--TCKEGFY 241  

                   ......gC<-*
                    +++ + C   
   mKIAA0818   242 lnhtvgLC    249  

EGF_Lam: domain 2 of 5, from 252 to 296: score 46.8, E = 2.9e-09
                   *->CdCnlpppvG.....CdptGqClnCkpnttGGrrCdderCapGyy..
                      C+C+   p+G  +  C+++G C+ Ck ++tG   Cd  +C++G+y+ 
   mKIAA0818   252    CHCS---PHGavsilCNSSGNCQ-CKVGVTG-SMCD--KCQDGHYgf 291  

                   ...gC<-*
                   +++gC   
   mKIAA0818   292 gktGC    296  

EGF_Lam: domain 3 of 5, from 299 to 344: score 50.7, E = 1.9e-10
                   *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy..
                      C+Cn     +++++Cd +tG ClnC++n  G ++C+  +C++G+y++
   mKIAA0818   299    CQCN-----NrsdsCDVhTGACLNCQENSKG-EHCE--ECKEGFYps 337  

                   .....gC<-*
                   ++  + C   
   mKIAA0818   338 pdaakQC    344  

EGF_Lam: domain 4 of 5, from 347 to 395: score 25.3, E = 0.0084
                   *->CdCnlpppvG......Cdp.....tGqClnCkpnttGGrrCdderCa
                      C+C+       +++++C  ++++    C+ Ck+++tG ++C+  +C+
   mKIAA0818   347    CPCS-----AvtstgnCTIesgelEPTCDQCKDGYTG-QNCN--KCE 385  

                   pGyy....gC<-*
                   +Gyy++++ C   
   mKIAA0818   386 NGYYnsdsIC    395  

EGF_Lam: domain 5 of 5, from 398 to 447: score 49.7, E = 4e-10
                   *->CdCnlpppvG..........Cdp.tGqClnCkpnttGGrrCdderCa
                      C+C+     G+ ++ ++++ C p++G C+nC +nttG   C+  +C+
   mKIAA0818   398    CECH-----GhvdpiktpkiCKPeSGECINCLHNTTG-FWCE--KCL 436  

                   pGyy.....gC<-*
                   +Gy ++ +++C   
   mKIAA0818   437 EGYVrdlqrNC    447  

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