hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg02936/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0818 ( 600 res) mbg02936 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Laminin_EGF Laminin EGF-like (Domains III and V) 199.2 6.5e-56 5 VSP Giardia variant-specific surface protein -215.6 0.11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Laminin_EGF 1/5 202 249 .. 1 59 [] 50.3 4.4e-11 Laminin_EGF 2/5 252 296 .. 1 59 [] 51.6 1.8e-11 Laminin_EGF 3/5 299 344 .. 1 59 [] 54.6 2.2e-12 Laminin_EGF 4/5 347 395 .. 1 59 [] 19.7 0.0016 Laminin_EGF 5/5 398 447 .. 1 59 [] 55.1 1.5e-12 VSP 1/1 202 540 .. 1 412 [] -215.6 0.11 Alignments of top-scoring domains: Laminin_EGF: domain 1 of 5, from 202 to 249: score 50.3, E = 4.4e-11 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C+++Gsl+ +C++ tGqC+ C +++G +Cd Ck+G+ mKIAA0818 202 CNCSEVGSLDVKRCNQ-------TTGQCD-CHVGYQGLHCDTCKEGF 240 yglpsgdpgqgC<-* y l+ + g C mKIAA0818 241 Y-LNH-TVG-LC 249 Laminin_EGF: domain 2 of 5, from 252 to 296: score 51.6, E = 1.8e-11 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C+phG++s C+s +G C+ Ck +vtG Cd C++G+ mKIAA0818 252 CHCSPHGAVS-ILCNS--------SGNCQ-CKVGVTGSMCDKCQDGH 288 yglpsgdpgqgC<-* yg+ + gC mKIAA0818 289 YGF---GKT-GC 296 Laminin_EGF: domain 3 of 5, from 299 to 344: score 54.6, E = 2.2e-12 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+Cn+++ d+Cd +tG+Cl+C++n G++C++Ck+G+ mKIAA0818 299 CQCNNRS----DSCDV-------HTGACLNCQENSKGEHCEECKEGF 334 yglpsgdpgqgC<-* y p +C mKIAA0818 335 YPSPD-AAK-QC 344 Laminin_EGF: domain 4 of 5, from 347 to 395: score 19.7, E = 0.0016 *->CdCnphGslsddtCdsddelfgeetGq....ClkCkpnvtGrrCdrC C C+ + s++ C e+G+ +++C+ Ck+++tG++C+ C mKIAA0818 347 CPCSAVTSTG--NCTI-------ESGEleptCDQCKDGYTGQNCNKC 384 kpGyyglpsgdpgqgC<-* + Gyy ++ C mKIAA0818 385 ENGYY-----NSDSIC 395 Laminin_EGF: domain 5 of 5, from 398 to 447: score 55.1, E = 1.5e-12 *->CdCnphGslsd..dtCdsddelfgeetGqClkCkpnvtGrrCdrCkp C+C++h ++ ++ C + e+G+C +C++n+tG +C+ C++ mKIAA0818 398 CECHGHVDPIKtpKICKP-------ESGECINCLHNTTGFWCEKCLE 437 GyyglpsgdpgqgC<-* Gy + d ++C mKIAA0818 438 GYVR----DLQRNC 447 VSP: domain 1 of 1, from 202 to 540: score -215.6, E = 0.11 *->CaeCklGyelsadktkcetsaPPdCkveNCkaCsnekeeNevCeeCn C C + l + +++t C C + C C mKIAA0818 202 CN-CSEVGSLDVKRCNQTTGQ---C---DCHVGYQGLH----CDTCK 237 SgfyLtpnTsqCid.aCakiGnyYaqTnaqnKkiCkeCtvAnCktCedqG gfyL C + C G + n+ Ck mKIAA0818 238 EGFYLNHTVGLCLPcHCSPHGAVSILCNS--------SGNCQCKVGVTGS 279 qcqaCndGfYksGda.CsPChescKTCsgGTaSdCTeCltGkaLrYGnDg c+ C dG Y G ++C PC + + Sd tG+ L mKIAA0818 280 MCDKCQDGHYGFGKTgCLPCQCNNR-------SDSCDVHTGACLNC-QEN 321 TKGtCGegCttgtGaGPaCkTCGLtIDGtsYCSeCateteyPqNGVCtSt KG e C +g P D ++ C C + + G Ct mKIAA0818 322 SKGEHCEECKEGFYPSP---------DAAKQCHRCPCS-AVTSTGNCTIE 361 aaRatatCkdstvanGv....CssCanGylrmnGGCYeTtKfPGKSVCee +tC +G ++++C+ C nGy + S+C++ mKIAA0818 362 SGELEPTCD--QCKDGYtgqnCNKCENGYYNSD------------SICTQ 397 angggDTCqkeapGYkld.sgdLvvC...SeGCktCtssTv...CttCad g ++d+ + +C+++S C C +T++ C +C++ mKIAA0818 398 CECHG----------HVDpIKTPKICkpeSGECINCLHNTTgfwCEKCLE 437 GyvkdggsdvCtkCDssCeTCTaGatt.tCktCaTGYYKsgtgcvkCtss Gyv d C k T G+t + T + ++ mKIAA0818 438 GYVRD-LQRNCIKQEVIVPTPE-GSTIlVSNASLTTSVPTPVINSTFAPT 485 esdSngitGVkgClsCAPPsnnkGSVlCYLikdsssGGnSTNKSGLSTGA + +i V s n+ S l + N mKIAA0818 486 TLQ--TIFAVSS-------SENSTSALADVSWTQ------FN-------- 512 IAGIsVAvviVVGGLVGFLCWWFiCRGKA<-* I V +++VV L GF ++ R mKIAA0818 513 IIILTVIIIVVVL-LMGFVGAVYMYREYQ 540 //