hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09915/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0817  ( 1399 res)   mbg09915

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PSI      domain found in Plexins, Semaphorins and Int    47.3      2e-09   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/4     430   470 ..     1    56 []     5.5       11
PSI        2/4     478   533 ..     1    56 []    19.4     0.47
PSI        3/4     614   672 ..     1    56 []    12.7      2.1
PSI        4/4     674   731 ..     1    56 []    33.3  3.3e-05

Alignments of top-scoring domains:
PSI: domain 1 of 4, from 430 to 470: score 5.5, E = 11
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.....erCderrg
                      +C+ +  +s ++C +++    C WC  +g+C +g++ ++  C+    
   mKIAA0817   430    PCRLL--PSPEACNQSGA---CTWC--HGACLSGdqahrLGCG---- 465  

                   srqnwssgpssqCp<-*
                        +      C+   
   mKIAA0817   466 -----VP----PCS    470  

PSI: domain 2 of 4, from 478 to 533: score 19.4, E = 0.47
                   *->rCsqygvtsCseCllardpyg...........CgWCss..egrCtrg
                      +C+++  ++CseCl+++++  ++++++ + ++C WC++ +eg+C+ +
   mKIAA0817   478    ECRRL--RTCSECLARHPRTLqpgdgeasiprCKWCTNcpEGACIGR 522  

                   .erCderrgsrqnwssgpssqCp<-*
                   +++C++            ++ C    
   mKIAA0817   523 nGSCTS------------ENDCR    533  

PSI: domain 3 of 4, from 614 to 672: score 12.7, E = 2.1
                   *->rCsqygvtsCseCllardpyg....CgWCssegrCtrg.........
                      +C+ +  ++C++Cl++    g+ ++C W ss ++C +++  + +   
   mKIAA0817   614    PCHLL--PNCTSCLASKGADGgwqhCVWSSSLQQCLSPsylplrcma 658  

                   erCderrgsrqnwssgpssqCp<-*
                   + C++       +++ + ++C+   
   mKIAA0817   659 GGCGR-------LLR-GPESCS    672  

PSI: domain 4 of 4, from 674 to 731: score 33.3, E = 3.3e-05
                   *->rCsqygvtsCseCllardpygCgWCss.....egrCtrg........
                      +C+q+  t C+ Cl +++   CgWC++++++++g+C++g+ ++++++
   mKIAA0817   674    GCAQA--TQCALCLRRPH---CGWCAWggqdgGGHCMEGglsgprdg 715  

                   erCderrgsrqnwssgpssqCp<-*
                     C++   + ++w ++   +Cp   
   mKIAA0817   716 LTCGR---PGASWAFL---SCP    731  

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