hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg09915/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0817 ( 1399 res) mbg09915 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 56.1 7.9e-13 5 Kelch_2 Kelch motif 45.7 1e-09 6 EGF EGF-like domain 20.8 0.032 4 C_tripleX Cysteine rich repeat 18.4 0.17 1 EGF_CA Calcium binding EGF domain 8.9 0.081 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/4 17 54 .. 1 39 [] 8.4 2.8 EGF 2/4 59 90 .. 1 39 [] 14.4 0.73 Kelch_2 1/6 119 166 .. 1 54 [] 4.4 66 Kelch_2 2/6 175 223 .. 1 54 [] 18.6 0.15 Kelch_1 1/5 175 223 .. 1 45 [] 22.7 0.0086 Kelch_1 2/5 229 276 .. 1 45 [] 3.2 11 Kelch_1 3/5 281 332 .. 1 45 [] 10.7 1.6 Kelch_2 3/6 281 332 .. 1 54 [] 8.0 22 Kelch_1 4/5 338 384 .. 1 45 [] 17.2 0.3 Kelch_2 4/6 338 384 .. 1 54 [] 8.7 18 Kelch_1 5/5 394 438 .. 1 45 [] 2.3 14 Kelch_2 5/6 394 438 .. 1 54 [] 4.1 73 EGF_CA 1/1 734 773 .. 1 55 [] 8.9 0.081 EGF 3/4 736 773 .. 1 39 [] 8.8 2.6 C_tripleX 1/1 771 788 .. 1 18 [] 18.4 0.17 EGF 4/4 777 803 .. 1 39 [] 13.6 0.88 Kelch_2 6/6 853 900 .. 1 54 [] 2.0 1.4e+02 Alignments of top-scoring domains: EGF: domain 1 of 4, from 17 to 54: score 8.4, E = 2.8 *->Cspnn.gpCsngGtCvdtpg...gytCeCppGdyfllytGkrC<-* C + +g C +Cv+ +g + C+Cp+G ++G++C mKIAA0817 17 CGSGGpGSCPVPQECVPQDGaagAGLCRCPQG-----WAGPHC 54 EGF: domain 2 of 4, from 59 to 90: score 14.4, E = 0.73 *->CspnngpCsng...GtCvdtpggytCeCppGdyfllytGkrC<-* C++ +C+ +++ G+C+++ C+C++G + G++C mKIAA0817 59 CPE---NCNAHtgaGICNQSL--GVCICAEG-----FGGPDC 90 Kelch_2: domain 1 of 6, from 119 to 166: score 4.4, E = 66 *->pryphasv.vpggklyvvGGsfkgnrgtgngdesssdllvldpetnv r +h++v+ p+ l ++GG g++ ++ l+++ ++++ mKIAA0817 119 HRLGHTMVeGPDATLWMFGGL-------GLPQGLLGNLYRYSVSERR 158 Weklpalp<-* W+ + a mKIAA0817 159 WTQMLAGA 166 Kelch_2: domain 2 of 6, from 175 to 223: score 18.6, E = 0.15 *->pryphasvvp...ggklyvvGGsfkgnrgtgngdesssdllvldpet pr+ ha++ ++ ++g +y+ GG + +++d++vl++ t mKIAA0817 175 PRSFHAAAYVpagRGAMYLLGGL--------TAGGVTRDFWVLNLTT 213 nvWeklpalp<-* +W+ +++ mKIAA0817 214 LQWRQEKPPQ 223 Kelch_1: domain 1 of 5, from 175 to 223: score 22.7, E = 0.0086 *->pRsgagvvvl...dgkiYviGGydg.qslnsvevYDpetntWtklps pRs++++++++ + g +Y GG + + +++++v++++t +W++ + mKIAA0817 175 PRSFHAAAYVpagRGAMYLLGGLTAgGVTRDFWVLNLTTLQWRQEKP 221 mp<-* ++ mKIAA0817 222 PQ 223 Kelch_1: domain 2 of 5, from 229 to 276: score 3.2, E = 11 *->pRsgagvvvldgk.iYviGGydg..qslnsvevYDpetntWtklpsm + +g++ ++ g+++ +GGy++++ + Y + t+tW ++ mKIAA0817 229 AVAGHTLTARRGLsLLLVGGYSPenGFNQQLLEYQLATGTWVSGAQS 275 p<-* + mKIAA0817 276 G 276 Kelch_1: domain 3 of 5, from 281 to 332: score 10.7, E = 1.6 *->pRsgagvvvldgk..iYviGGydg.....qslnsvevYDpetntWtk +g+++v+++ +++Yv+GG+ + + ++ +++++ + tW+ mKIAA0817 281 GLYGHSAVYHEATdsLYVFGGFRFhvelaAPSPELYSLHCPDRTWSL 327 lpsmp<-* l++ + mKIAA0817 328 LAPSQ 332 Kelch_2: domain 3 of 6, from 281 to 332: score 8.0, E = 22 *->pryphasvvp..ggklyvvGGsfkgnrgtgngdesssdllvldpetn ++y+h++v + + lyv+GG+ r++ + + s l+ l++ ++ mKIAA0817 281 GLYGHSAVYHeaTDSLYVFGGF----RFHVELAAPSPELYSLHCPDR 323 vWeklpalp<-* +W+ l++ mKIAA0817 324 TWSLLAPSQ 332 Kelch_1: domain 4 of 5, from 338 to 384: score 17.2, E = 0.3 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp pR +++++ l++ + v GG++++++++++v Y + ntW + + mKIAA0817 338 PRLFHASALLGDTMVVLGGRSDpdEFSSDVLLYQVNCNTWLLPALTR 384 <-* mKIAA0817 - - Kelch_2: domain 4 of 6, from 338 to 384: score 8.7, E = 18 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr has+++g+ ++v GG+ ++de+ssd+l++ + n+W mKIAA0817 338 PRLFHASALLGDTMVVLGGR-------SDPDEFSSDVLLYQVNCNTW 377 eklpalp<-* + mKIAA0817 378 LLPALTR 384 Kelch_1: domain 5 of 5, from 394 to 438: score 2.3, E = 14 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- + ++v++++ ++Y+ GG+ g++l ++ + + + lps+ mKIAA0817 394 ESVAHAVAAVGSRLYISGGFGGVALGRLLALTLPPDPCRLLPSPE 438 * mKIAA0817 - - Kelch_2: domain 5 of 6, from 394 to 438: score 4.1, E = 73 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++ ha++ +g++ly++GG+ g+ ++ +ll l + mKIAA0817 394 ESVAHAVAAVGSRLYISGGF---------GGVALGRLLALTLPPDPC 431 eklpalp<-* + lp++ mKIAA0817 432 RLLPSPE 438 EGF_CA: domain 1 of 1, from 734 to 773: score 8.9, E = 0.081 *->DvDECatgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvse DECa+g h+C +e+ C+ ++eC+ C+ GY+ mKIAA0817 734 --DECANGH-HDC---NETQNCHDQPHGYECS----CKTGYT----- 765 nnedgtnC<-* + ++C mKIAA0817 766 MDNVTGVC 773 EGF: domain 3 of 4, from 736 to 773: score 8.8, E = 2.6 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C+ ++ C+ C+d p+gy+C C+ G y + C mKIAA0817 736 CANGHHDCNETQNCHDQPHGYECSCKTG-YTMDNVTGVC 773 C_tripleX: domain 1 of 1, from 771 to 788: score 18.4, E = 0.17 *->psCvpqCqqaCqnGsCvs<-* ++C p+C q+C nGsCv+ mKIAA0817 771 GVCRPVCAQGCVNGSCVE 788 EGF: domain 4 of 4, from 777 to 803: score 13.6, E = 0.88 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C++ +C n G Cv+ + +C+C+ G + G++C mKIAA0817 777 CAQ---GCVN-GSCVEPD---HCRCHFG-----FVGRNC 803 Kelch_2: domain 6 of 6, from 853 to 900: score 2.0, E = 1.4e+02 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ha++ +++ ++v+ + ++ ++ +s+d +e+++W mKIAA0817 853 CRPCHAFCRGNSHVCVSRKE--LEMARKEPEKYSLDP----EEIETW 893 eklpalp<-* + mKIAA0817 894 VAEGPSE 900 //