hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg21892/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0816  ( 1168 res)   mbg21892

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LY       Low-density lipoprotein-receptor YWTD domain   639.9   8.2e-188  14
EGF      Epidermal growth factor-like domain.            35.8    5.9e-06   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF        1/4      21    57 ..     1    32 []    18.1      1.2
LY         1/14     85   127 ..     1    51 []    40.9  1.7e-07
LY         2/14    128   170 ..     1    51 []    69.4  4.5e-16
LY         3/14    171   214 ..     1    51 []    48.8  7.3e-10
LY         4/14    215   257 ..     1    51 []    67.6  1.6e-15
LY         5/14    258   299 ..     1    51 []    34.0  2.1e-05
EGF        2/4     325   364 ..     1    32 []    20.6     0.22
LY         6/14    393   435 ..     1    51 []    42.4  6.1e-08
LY         7/14    436   478 ..     1    51 []    56.4  3.7e-12
LY         8/14    479   522 ..     1    51 []    44.1  1.8e-08
LY         9/14    523   565 ..     1    51 []    50.5  2.3e-10
LY        10/14    566   605 ..     1    51 []    18.0      1.1
EGF        3/4     632   669 ..     1    32 []    20.7      0.2
LY        11/14    697   739 ..     1    51 []    38.3    1e-06
LY        12/14    740   782 ..     1    51 []    57.0  2.5e-12
LY        13/14    783   826 ..     1    51 []    59.3    5e-13
LY        14/14    827   869 ..     1    51 []    64.8  1.1e-14
EGF        4/4     881   912 ..     1    32 []     0.2  2.4e+02

Alignments of top-scoring domains:
EGF: domain 1 of 4, from 21 to 57: score 18.1, E = 1.2
                   *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg....rCe<-
                       C +++++C +        C++++  ytC Cp  G++  +++ C   
   mKIAA0816    21    RCGdnngGCTH-------LCLpsgqNYTCaCP-TGFRKinshACA   57   

                   *
                    
   mKIAA0816     -   -    

LY: domain 1 of 14, from 85 to 127: score 40.9, E = 1.7e-07
                   *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl
                       v+   ++++    +A+Dw +++d +YWtD+++d      +I+ra++
   mKIAA0816    85    DVIPLADVrSA---VALDWDSRDDHVYWTDVSTD------TISRAKW 122  

                   dGtnr<-*
                   dGt++   
   mKIAA0816   123 DGTGQ    127  

LY: domain 2 of 14, from 128 to 170: score 69.4, E = 4.5e-16
                   *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl
                      +v+v+++l++P+g lA+Dw+++  +lYWtD+g+d      +Ie+an 
   mKIAA0816   128    EVVVDTSLeSPAG-LAIDWVTN--KLYWTDAGTD------RIEVANT 165  

                   dGtnr<-*
                   dG++r   
   mKIAA0816   166 DGSMR    170  

LY: domain 3 of 14, from 171 to 214: score 48.8, E = 7.3e-10
                   *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl
                      +vl+ ++l+ Pr  ++v +++g  ++YWtDwg       +kIera +
   mKIAA0816   171    TVLIWENLdRPRD-IVVEPMGG--YMYWTDWGAS-----PKIERAGM 209  

                   dGtnr<-*
                   d + r   
   mKIAA0816   210 DASSR    214  

LY: domain 4 of 14, from 215 to 257: score 67.6, E = 1.6e-15
                   *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl
                      +v++ss+l+wP+g lA+D+ ++  rlYW+D+g++      +Ie a l
   mKIAA0816   215    QVIISSNLtWPNG-LAIDYGSQ--RLYWADAGMK------TIEFAGL 252  

                   dGtnr<-*
                   dG+ r   
   mKIAA0816   253 DGSKR    257  

LY: domain 5 of 14, from 258 to 299: score 34.0, E = 2.1e-05
                   *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl
                      +vl+ s+l++P   + +  +++  r+YWtDw ++     ++ ++ +l
   mKIAA0816   258    KVLIGSQLpHP---FGLTLYGQ--RIYWTDWQTK-----SIQSADRL 294  

                   dGtnr<-*
                   +G +r   
   mKIAA0816   295 TGLDR    299  

EGF: domain 2 of 4, from 325 to 364: score 20.6, E = 0.22
                   *->eCa....pCsnGgtEqnGtCi......sytC.CpgpGytg.....rC
                       Ca ++++Cs+        C++++++++++C+Cp  G  + +++++C
   mKIAA0816   325    LCAvengGCSH-------LCLrspnpsGFSCtCP-TGINLlrdgkTC 363  

                   e<-*
                       
   mKIAA0816   364 S    364  

LY: domain 6 of 14, from 393 to 435: score 42.4, E = 6.1e-08
                   *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl
                       v ++  +++  + + vD++eg  ++YW+D++l+      +I+ra+l
   mKIAA0816   393    VVPINMTMkNTIA-IGVDPLEG--KVYWSDSTLH------RISRASL 430  

                   dGtnr<-*
                   dG+ +   
   mKIAA0816   431 DGSQH    435  

LY: domain 7 of 14, from 436 to 478: score 56.4, E = 3.7e-12
                   *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl
                      + ++++gl++ +g lAvD i++  ++YWtD g++      +Ie+ nl
   mKIAA0816   436    EDIITTGLqTTDG-LAVDAIGR--KVYWTDTGTN------RIEVGNL 473  

                   dGtnr<-*
                   dG++r   
   mKIAA0816   474 DGSMR    478  

LY: domain 8 of 14, from 479 to 522: score 44.1, E = 1.8e-08
                   *->rvlvssgl.wPrgalAvDwiegedrlYWtDwgldgsddkakIeranl
                      +vlv ++l++Pr+ +++ +  g  ++YWtDwg++     ak er+ +
   mKIAA0816   479    KVLVWQNLdSPRA-IVLYHEMG--FMYWTDWGEN-----AKLERSGM 517  

                   dGtnr<-*
                   dG++r   
   mKIAA0816   518 DGSDR    522  

	[output cut off at A = 10 top alignments]
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