hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm01062/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0815 ( 835 res) mpm01062 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EGF_Lam Laminin-type epidermal growth factor-like do 227.1 1.5e-63 19 EGF Epidermal growth factor-like domain. 176.0 3.7e-48 19 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/19 4 35 .. 1 32 [] 5.6 80 EGF_Lam 1/19 9 47 .. 1 42 [] 20.7 0.18 EGF 2/19 46 79 .. 1 32 [] 19.8 0.38 EGF_Lam 2/19 54 91 .. 1 42 [] 19.0 0.24 EGF 3/19 90 122 .. 1 32 [] 23.3 0.035 EGF_Lam 3/19 95 134 .. 1 42 [] 26.0 0.0051 EGF 4/19 133 166 .. 1 32 [] 14.7 13 EGF_Lam 4/19 138 178 .. 1 42 [] 32.9 4.2e-05 EGF 5/19 177 209 .. 1 32 [] 22.4 0.062 EGF_Lam 5/19 182 221 .. 1 42 [] 11.9 0.93 EGF 6/19 220 252 .. 1 32 [] 6.9 63 EGF_Lam 6/19 225 264 .. 1 42 [] 19.4 0.23 EGF 7/19 263 295 .. 1 32 [] 18.5 0.95 EGF_Lam 7/19 268 307 .. 1 42 [] 19.2 0.24 EGF 8/19 306 338 .. 1 32 [] 20.0 0.33 EGF_Lam 8/19 311 350 .. 1 42 [] 24.1 0.019 EGF 9/19 340 381 .. 1 32 [] 19.9 0.36 EGF_Lam 9/19 354 393 .. 1 42 [] 13.9 0.63 EGF 10/19 392 424 .. 1 32 [] 22.3 0.07 EGF_Lam 10/19 397 436 .. 1 42 [] 7.9 2 EGF 11/19 435 467 .. 1 32 [] 21.8 0.095 EGF_Lam 11/19 440 479 .. 1 42 [] 26.4 0.004 EGF 12/19 469 511 .. 1 32 [] 11.4 25 EGF_Lam 12/19 483 523 .. 1 42 [] 23.0 0.042 EGF 13/19 522 554 .. 1 32 [] 17.2 2.3 EGF_Lam 13/19 527 566 .. 1 42 [] 11.4 1 EGF 14/19 565 597 .. 1 32 [] 18.6 0.87 EGF_Lam 14/19 570 609 .. 1 42 [] 9.6 1.4 EGF 15/19 608 640 .. 1 32 [] 22.5 0.06 EGF_Lam 15/19 613 652 .. 1 42 [] 12.2 0.88 EGF 16/19 651 683 .. 1 32 [] 19.0 0.68 EGF_Lam 16/19 656 695 .. 1 42 [] 21.7 0.1 EGF 17/19 694 726 .. 1 32 [] 18.0 1.3 EGF_Lam 17/19 699 738 .. 1 42 [] 33.6 2.7e-05 EGF 18/19 728 769 .. 1 32 [] 7.4 57 EGF_Lam 18/19 742 781 .. 1 42 [] 27.7 0.0016 EGF 19/19 780 812 .. 1 32 [] 11.5 25 EGF_Lam 19/19 785 835 .] 1 42 [] 9.9 1.3 Alignments of top-scoring domains: EGF: domain 1 of 19, from 4 to 35: score 5.6, E = 80 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ C + C++ + +C Cp pG tg+ C mKIAA0815 4 NCSgscSCVG------APCHrvTGEClCP-PGKTGeDCG 35 EGF_Lam: domain 1 of 19, from 9 to 47: score 20.7, E = 0.18 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C C G +C++ tG Cl C p+ tG + C ++ C +G ++ gC mKIAA0815 9 CSCV-----GapCHRvTGECL-CPPGKTG-EDCGAD-CPEGRWglGC 47 <-* mKIAA0815 - - EGF: domain 2 of 19, from 46 to 79: score 19.8, E = 0.38 *->eCa....pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C++ + C++G + C +++ tC C pG+ g+rC+ mKIAA0815 46 GCQeicpACEHG-----ASCDpeTGTClCL-PGFVGsRCQ 79 EGF_Lam: domain 2 of 19, from 54 to 91: score 19.0, E = 0.24 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C+ + G +Cdp+tG Cl C p+ +G rC d+ C G +++gC mKIAA0815 54 CE-H-----GasCDPeTGTCL-CLPGFVG-SRCQDA-CPAGWFgtGC 91 <-* mKIAA0815 - - EGF: domain 3 of 19, from 90 to 122: score 23.3, E = 0.035 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+ + C n+ G+C++ + +C+C+ pG+tg +C+ mKIAA0815 90 GCQmrcACAND-----GHCHpaTGRCsCA-PGWTGlSCQ 122 EGF_Lam: domain 3 of 19, from 95 to 134: score 26.0, E = 0.0051 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC< C C +G+C+p tG+C C p+ tG C ++ C G+++++C mKIAA0815 95 CACA---NDGhCHPaTGRCS-CAPGWTG-LSCQRA-CDSGHWgpDC 134 -* mKIAA0815 - - EGF: domain 4 of 19, from 133 to 166: score 14.7, E = 13 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* +C ++ Cs G +G C s C C +Gy+g++Ce mKIAA0815 133 DCIhpcNCSAG----HGNCDavSGLClCE-AGYEGpQCE 166 EGF_Lam: domain 4 of 19, from 138 to 178: score 32.9, E = 4.2e-05 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C+C+ +++++Cd +G Cl C +++G ++C++ C+ Gy+++gC mKIAA0815 138 CNCS---AGHgnCDAvSGLCL-CEAGYEG-PQCEQW-CRQGYFgpGC 178 <-* mKIAA0815 - - EGF: domain 5 of 19, from 177 to 209: score 22.4, E = 0.062 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C+++ C++G +tC + s C+Cp +G++g+ Ce mKIAA0815 177 GCEqkcRCEHG-----ATCDhvSGACtCP-AGWRGsFCE 209 EGF_Lam: domain 5 of 19, from 182 to 221: score 11.9, E = 0.93 *->CdCnlpppvG..Cdp.tGqClnCkpnttGGrrCdderCapGyy..gC C C +G +Cd +G C C + G C+ + C G+++ +C mKIAA0815 182 CRCE----HGatCDHvSGACT-CPAGWRG-SFCEHA-CPAGFFglDC 221 <-* mKIAA0815 - - [output cut off at A = 10 top alignments] //