hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm01062/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0815 ( 835 res) mpm01062 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EGF_2 EGF-like domain 138.7 1e-37 19 EGF EGF-like domain 13.1 0.98 19 Keratin_B2 Keratin, high sulfur B2 protein -70.7 0.35 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/19 4 34 .. 1 39 [] 3.8 7.9 EGF_2 1/19 9 34 .. 1 37 [] 5.3 5.4 EGF_2 2/19 51 78 .. 1 37 [] 12.4 0.89 EGF 2/19 51 78 .. 1 39 [] 14.9 0.66 EGF 3/19 91 121 .. 1 39 [] 10.0 2 EGF_2 3/19 95 121 .. 1 37 [] 21.1 0.026 Keratin_B2 1/1 8 138 .. 1 177 [] -70.7 0.35 EGF_2 4/19 138 165 .. 1 37 [] 20.6 0.038 EGF 4/19 125 165 .. 1 39 [] 3.9 7.8 EGF_2 5/19 182 208 .. 1 37 [] 9.1 2.1 EGF 5/19 178 208 .. 1 39 [] 12.0 1.2 EGF 6/19 221 251 .. 1 39 [] 2.8 10 EGF_2 6/19 225 251 .. 1 37 [] 12.5 0.87 EGF_2 7/19 268 294 .. 1 37 [] 22.9 0.0073 EGF 7/19 255 294 .. 1 39 [] 8.9 2.6 EGF_2 8/19 311 337 .. 1 37 [] 22.5 0.0098 EGF 8/19 307 337 .. 1 39 [] 10.7 1.7 EGF 9/19 350 380 .. 1 39 [] 20.6 0.036 EGF_2 9/19 354 380 .. 1 37 [] 33.6 4.7e-06 EGF_2 10/19 397 423 .. 1 37 [] 19.7 0.071 EGF 10/19 393 423 .. 1 39 [] 9.9 2 EGF 11/19 442 466 .. 1 39 [] 14.1 0.79 EGF_2 11/19 440 466 .. 1 37 [] 6.6 3.9 EGF 12/19 470 510 .. 1 39 [] 3.8 8 EGF_2 12/19 485 510 .. 1 37 [] 3.0 9.8 EGF 13/19 523 553 .. 1 39 [] 5.3 5.7 EGF_2 13/19 527 553 .. 1 37 [] 28.2 0.00019 EGF 14/19 557 596 .. 1 39 [] 9.0 2.5 EGF_2 14/19 570 596 .. 1 37 [] 4.5 6.7 EGF 15/19 609 639 .. 1 39 [] 6.2 4.6 EGF_2 15/19 613 639 .. 1 37 [] 24.5 0.0024 EGF 16/19 652 682 .. 1 39 [] 10.2 1.9 EGF_2 16/19 656 682 .. 1 37 [] 16.1 0.35 EGF 17/19 686 725 .. 1 39 [] 1.9 12 EGF_2 17/19 699 725 .. 1 37 [] 13.3 0.71 EGF 18/19 729 768 .. 1 39 [] 7.5 3.5 EGF_2 18/19 729 768 .. 1 37 [] -6.5 1.1e+02 EGF_2 19/19 785 811 .. 1 37 [] 13.0 0.76 EGF 19/19 781 811 .. 1 39 [] 4.7 6.6 Alignments of top-scoring domains: EGF: domain 1 of 19, from 4 to 34: score 3.8, E = 7.9 *->CspnngpCsngGtCvdtpg.....gytCeCppGdyfllytGkrC<-* +Cs+ C +++++ ++ + +C CppG tG++C mKIAA0815 4 ------NCSG--SCSCVGApchrvTGECLCPPG-----KTGEDC 34 EGF_2: domain 1 of 19, from 9 to 34: score 5.3, E = 5.4 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C + C++ +g C C++g +G dC mKIAA0815 9 CsCV--GAPCHRV------TGECLCPPGK----TGEDC 34 EGF_2: domain 2 of 19, from 51 to 78: score 12.4, E = 0.89 *->C..CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+ C + C+ p+ +g C C +g + G C mKIAA0815 51 CpaCEH-GASCD-PE-----TGTCLCLPG----FVGSRC 78 EGF: domain 2 of 19, from 51 to 78: score 14.9, E = 0.66 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C+ C +g+ C + + tC C pG + G rC mKIAA0815 51 CPA----CEHGASCDPE--TGTCLCLPG-----FVGSRC 78 EGF: domain 3 of 19, from 91 to 121: score 10.0, E = 2 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C+ C n+G C++ + +C C+pG +tG C mKIAA0815 91 CQMRC-ACANDGHCHPA--TGRCSCAPG-----WTGLSC 121 EGF_2: domain 3 of 19, from 95 to 121: score 21.1, E = 0.026 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C C + +G+C+ +g+C+C +g ++G C mKIAA0815 95 CaCAN-DGHCHPA------TGRCSCAPG----WTGLSC 121 Keratin_B2: domain 1 of 1, from 8 to 138: score -70.7, E = 0.35 *->qtScCGfptCStlgtrPsC.....GsscCQPsCCe....SCCQpsCc + Sc G p+ + +g C+++++G +c C e++ + CQ+ C mKIAA0815 8 SCSCVGAPCHRVTG-ECLCppgktGEDCGAD-CPEgrwgLGCQEIC- 51 qpSCCqPtcsqtscCqPtcfqssCCrPsCcqTSCCqPtCcqsssCqtgCg P c C+P + C + + s Cq C mKIAA0815 52 ------PACEHGASCDPETGTC-----LCLP-------GFVGSRCQDAC- 82 igGsiGyGQeGsSGAvScrirWCRPdCrvegtClPpCCvvsCtaPTCCqp P + C+ +C C C p mKIAA0815 83 ------------------------PAGWFGTGCQMRC---ACANDGHCHP 105 vsaQasCCRPsCqPyCgqsCCRPaC.ccsvtCtrTccePc<-* +sC P ++g + C+ aC++++ c+ Pc mKIAA0815 106 ATGRCSCA-PG---WTG-LSCQRACdSGH--WGPDCIHPC 138 EGF_2: domain 4 of 19, from 138 to 165: score 20.6, E = 0.038 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C+ +hG C+ g C C+ g y G++C mKIAA0815 138 CnCSAGHGNCDAV------SGLCLCEAG----YEGPQC 165 EGF: domain 4 of 19, from 125 to 165: score 3.9, E = 7.8 *->Cspnn..gpCsngGtCvdtpg.......gytCeCppGdyfllytGkr C++ + + C + C+++ g+++ + + C C G y G++ mKIAA0815 125 CDSGHwgPDCIH--PCNCSAGhgncdavSGLCLCEAG-----YEGPQ 164 C<-* C mKIAA0815 165 C 165 EGF_2: domain 5 of 19, from 182 to 208: score 9.1, E = 2.1 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C + tC+ + g C C+ g + G C mKIAA0815 182 CrCEH-GATCD--HV----SGACTCPAG----WRGSFC 208 EGF: domain 5 of 19, from 178 to 208: score 12.0, E = 1.2 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C + C +g+tC + C Cp G + G +C mKIAA0815 178 CEQKC-RCEHGATCDHVS--GACTCPAG-----WRGSFC 208 EGF: domain 6 of 19, from 221 to 251: score 2.8, E = 10 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C + +Cs g+ C + + +C+Cp G G++C mKIAA0815 221 CGSAC-NCSAGAPCDAV--TGSCICPAG-----RWGPHC 251 EGF_2: domain 6 of 19, from 225 to 251: score 12.5, E = 0.87 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C+ + C+ +g C C+ g G++C mKIAA0815 225 CnCSA-GAPCDAV------TGSCICPAG----RWGPHC 251 EGF_2: domain 7 of 19, from 268 to 294: score 22.9, E = 0.0073 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C + + C+ p+ g+C+C +g + G++C mKIAA0815 268 CtCFN-GASCD-PVL-----GQCHCAPG----WMGPTC 294 EGF: domain 7 of 19, from 255 to 294: score 8.9, E = 2.6 *->Cspnn..gpCsngGtCvdtpg......gytCeCppGdyfllytGkrC C+p + + +Cs +C++ g + ++ +C+C+pG + G++C mKIAA0815 255 CPPLTfgLNCSQ--ICTCFNGascdpvLGQCHCAPG-----WMGPTC 294 <-* mKIAA0815 - - EGF_2: domain 8 of 19, from 311 to 337: score 22.5, E = 0.0098 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C C + +G C+ p g+C C+ g ++G +C mKIAA0815 311 ClCRN-GGSCD-PIL-----GQCTCPEG----WTGLAC 337 EGF: domain 8 of 19, from 307 to 337: score 10.7, E = 1.7 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C+ C ngG C + +C Cp+G +tG C mKIAA0815 307 CQHSC-LCRNGGSCDPIL--GQCTCPEG-----WTGLAC 337 EGF: domain 9 of 19, from 350 to 380: score 20.6, E = 0.036 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C n C+ngGtC ++ + +C+Cp G +tG++C mKIAA0815 350 CRLNC-SCLNGGTCDRL--TGHCRCPAG-----WTGDKC 380 EGF_2: domain 9 of 19, from 354 to 380: score 33.6, E = 4.7e-06 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C + +GtC++ +g+C C+ g ++G++C mKIAA0815 354 CsCLN-GGTCDRL------TGHCRCPAG----WTGDKC 380 EGF_2: domain 10 of 19, from 397 to 423: score 19.7, E = 0.071 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C C + tC+ + +g C C++g + G +C mKIAA0815 397 CaCRK-GATCH--HV----TGACLCPPG----WRGSHC 423 EGF: domain 10 of 19, from 393 to 423: score 9.9, E = 2 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C ++ C g+tC+ + + C CppG + G +C mKIAA0815 393 CEEHC-ACRKGATCHHV--TGACLCPPG-----WRGSHC 423 EGF: domain 11 of 19, from 442 to 466: score 14.1, E = 0.79 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C+p C++ v++ +C+CppG +tG+ C mKIAA0815 442 CPPGA-SCHH----VSG----ECHCPPG-----FTGPGC 466 EGF_2: domain 11 of 19, from 440 to 466: score 6.6, E = 3.9 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C + C+ + g C+C++g ++G+ C mKIAA0815 440 ChCPP-GASCH--HV----SGECHCPPG----FTGPGC 466 EGF: domain 12 of 19, from 470 to 510: score 3.8, E = 8 *->Cspnn..gpCsngGtCvdtpg.......gytCeCppGdyfllytGkr C+p + + C + C++ +++ ++ + C C+ G y+G + mKIAA0815 470 CQPGTfgKDCEH--PCQCPGEtwachpaSGACVCAAG-----YHGTD 509 C<-* C mKIAA0815 510 C 510 EGF_2: domain 12 of 19, from 485 to 510: score 3.0, E = 9.8 *->C......Cngs.hGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C++++ C+ + G Cv C g y+G dC mKIAA0815 485 CpgetwaCH-PaSGACV-------------CAAG----YHGTDC 510 EGF: domain 13 of 19, from 523 to 553: score 5.3, E = 5.7 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C + C+ngGtC + + C Cp G + G +C mKIAA0815 523 CEQIC-KCLNGGTCDPA--TGACYCPAG-----FLGADC 553 EGF_2: domain 13 of 19, from 527 to 553: score 28.2, E = 0.00019 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C + +GtC+ +g C+C+ g + GadC mKIAA0815 527 CkCLN-GGTCDPA------TGACYCPAG----FLGADC 553 EGF: domain 14 of 19, from 557 to 596: score 9.0, E = 2.5 *->Cspnn..gpCsngGtCvdtpg......gytCeCppGdyfllytGkrC C++ + C + C++++g ++ + tC+CppG tG +C mKIAA0815 557 CPQGRfgPSCAH--VCTCGQGaacdpvSGTCICPPG-----KTGGHC 596 <-* mKIAA0815 - - EGF_2: domain 14 of 19, from 570 to 596: score 4.5, E = 6.7 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ + C+ p+ g C C++g +G +C mKIAA0815 570 CtCGQ-GAACD-PVS-----GTCICPPGK----TGGHC 596 EGF: domain 15 of 19, from 609 to 639: score 6.2, E = 4.6 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C C ngG C+ t +C Cp G + G++C mKIAA0815 609 CEHKC-ACRNGGLCHATN--GSCSCPLG-----WMGPHC 639 EGF_2: domain 15 of 19, from 613 to 639: score 24.5, E = 0.0024 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C C + +G C+ + g C+C+ g + G++C mKIAA0815 613 CaCRN-GGLCHAT------NGSCSCPLG----WMGPHC 639 EGF: domain 16 of 19, from 652 to 682: score 10.2, E = 1.9 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C + C+n+G C +t C C pG + G C mKIAA0815 652 CLLEC-SCQNNGSCEPTS--GACLCGPG-----FYGQAC 682 EGF_2: domain 16 of 19, from 656 to 682: score 16.1, E = 0.35 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ +G C+ + g+ C C +g ++G +C mKIAA0815 656 CsCQN-NGSCEPTSGA------CLCGPG----FYGQAC 682 EGF: domain 17 of 19, from 686 to 725: score 1.9, E = 12 *->Cspnn..gpCsngGtCvdtpg......gytCeCppGdyfllytGkrC C+ +++++C+ C + +g + ++ + +C Cp G + G +C mKIAA0815 686 CPAGFhgSGCQR--VCECQQGapcdpvSGRCLCPAG-----FRGQFC 725 <-* mKIAA0815 - - EGF_2: domain 17 of 19, from 699 to 725: score 13.3, E = 0.71 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C++ + C+ p+ g+C C+ g + G C mKIAA0815 699 CeCQQ-GAPCD-PVS-----GRCLCPAG----FRGQFC 725 EGF: domain 18 of 19, from 729 to 768: score 7.5, E = 3.5 *->Cspnn..gpCsngGtCvdtpg......gytCeCppGdyfllytGkrC C p + +++C+ +C++ g + ++ + C CppG +G +C mKIAA0815 729 CKPGFfgDGCLQ--QCNCPTGvpcdpiSGLCLCPPG-----RAGTTC 768 <-* mKIAA0815 - - EGF_2: domain 18 of 19, from 729 to 768: score -6.5, E = 1.1e+02 *->C........CngshGtCvspngtstpc....gkCvCdsgyedkyqGa C+++ +++C + + C t+ pc++ +g C C++g G mKIAA0815 729 CkpgffgdgCLQ-QCNCP----TGVPCdpisGLCLCPPG----RAGT 766 dC<-* +C mKIAA0815 767 TC 768 EGF_2: domain 19 of 19, from 785 to 811: score 13.0, E = 0.76 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+C+g + C+ g+C+C ++ y+G++C mKIAA0815 785 CdCGG-GADCDPI------SGQCHCVDS----YTGPTC 811 EGF: domain 19 of 19, from 781 to 811: score 4.7, E = 6.6 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C+ C +g+ C + +C+C ytG++C mKIAA0815 781 CALRC-DCGGGADCDPIS--GQCHCVDS-----YTGPTC 811 //