hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk00279/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0814  ( 116 res)   mpk00279

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CT       C-terminal cystine knot-like domain (CTCK)      31.7     0.0001   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CT         1/1      48   116 .]     1    94 []    31.7   0.0001

Alignments of top-scoring domains:
CT: domain 1 of 1, from 48 to 116: score 31.7, E = 0.0001
                   *->kspvrqtityngCssnqpvklafCeGkCgsasraedvmysieaqdvd
                        + r + +y+ C    +v +  C G Cg                  
   mKIAA0814    48    REAIRRQKDYASCATASKVPIMECRGGCG------------------ 76   

                   hsdCsCCqpektktrkVrLrCpdGstgvtktrvthiesCgCestkCp<-*
                       +CCqp ++k+rk  ++C+dGs+ ++ + v    +CgC +  C+   
   mKIAA0814    77 ---SQCCQPIRSKRRKYVFQCTDGSS-FVEE-VERHLECGCRA--CS    116  

//