hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg05377/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0813 ( 1557 res) mbg05377 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_TYP Leucine-rich repeats, typical (most populate 312.1 4e-89 18 EGF Epidermal growth factor-like domain. 205.3 5.4e-57 9 LRRCT Leucine rich repeat C-terminal domain 156.3 3.1e-42 4 LRRNT Leucine rich repeat N-terminal domain 147.0 2e-39 4 LamG Laminin G domain 141.7 7.9e-38 1 EGF_CA Calcium-binding EGF-like domain 80.6 1.9e-19 9 LRR_PS Leucine-rich repeat, plant-specific subfamil 66.6 3.2e-15 14 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily 32.4 6.1e-05 8 CT C-terminal cystine knot-like domain (CTCK) 25.7 0.00039 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRRNT 1/4 59 91 .. 1 38 [] 44.5 1.4e-08 LRR_TYP 1/18 85 109 .. 1 24 [] 7.3 53 LRR_PS 1/14 110 132 .. 1 24 [] 0.4 1.1e+03 LRR_TYP 2/18 110 133 .. 1 24 [] 15.4 5.5 LRR_PS 2/14 134 156 .. 1 24 [] 13.9 19 LRR_TYP 3/18 134 157 .. 1 24 [] 27.2 0.0023 LRR_TYP 4/18 159 181 .. 1 24 [] 14.5 7.1 LRR_SD22 1/8 182 203 .. 1 22 [] 3.4 3.1e+02 LRR_TYP 5/18 183 205 .. 1 24 [] 7.8 47 LRR_PS 3/14 206 228 .. 1 24 [] 20.1 0.31 LRR_TYP 6/18 206 229 .. 1 24 [] 29.7 0.00039 LRR_PS 4/14 230 253 .. 1 24 [] 0.4 1.1e+03 LRRCT 1/4 241 290 .. 1 55 [] 35.2 9.1e-06 LRRNT 2/4 307 339 .. 1 38 [] 42.1 7.4e-08 LRR_TYP 7/18 333 357 .. 1 24 [] 6.1 74 LRR_SD22 2/8 358 379 .. 1 22 [] 0.6 6.9e+02 LRR_PS 5/14 358 380 .. 1 24 [] 6.2 1.9e+02 LRR_TYP 8/18 358 381 .. 1 24 [] 21.8 0.097 LRR_PS 6/14 382 404 .. 1 24 [] 12.0 33 LRR_TYP 9/18 382 405 .. 1 24 [] 28.3 0.0011 LRR_TYP 10/18 406 429 .. 1 24 [] 16.7 3.2 LRR_SD22 3/8 430 448 .. 1 22 [] 7.6 96 LRR_PS 7/14 430 452 .. 1 24 [] 1.6 7.4e+02 LRR_TYP 11/18 430 453 .. 1 24 [] 22.4 0.065 LRRCT 2/4 465 514 .. 1 55 [] 37.8 1.5e-06 LRRNT 3/4 538 570 .. 1 38 [] 40.4 2.4e-07 LRR_SD22 4/8 590 611 .. 1 22 [] 1.5 5.4e+02 LRR_PS 8/14 590 612 .. 1 24 [] 8.4 97 LRR_TYP 12/18 590 613 .. 1 24 [] 26.4 0.0039 LRR_TYP 13/18 615 637 .. 1 24 [] 10.1 24 LRR_SD22 5/8 638 659 .. 1 22 [] 13.4 18 LRR_PS 9/14 638 660 .. 1 24 [] 0.8 9.5e+02 LRR_TYP 14/18 638 661 .. 1 24 [] 24.2 0.018 LRR_SD22 6/8 662 683 .. 1 22 [] 3.3 3.2e+02 LRR_PS 10/14 662 684 .. 1 24 [] 6.5 1.7e+02 LRR_TYP 15/18 662 685 .. 1 24 [] 22.8 0.047 LRRCT 3/4 697 746 .. 1 55 [] 38.8 7.4e-07 LRRNT 4/4 759 791 .. 1 38 [] 41.4 1.2e-07 LRR_PS 11/14 787 808 .. 1 24 [] 0.8 9.5e+02 LRR_SD22 7/8 809 830 .. 1 22 [] 5.7 1.6e+02 LRR_PS 12/14 809 831 .. 1 24 [] 10.6 50 LRR_TYP 16/18 809 832 .. 1 24 [] 12.0 14 LRR_SD22 8/8 833 854 .. 1 22 [] 3.6 2.9e+02 LRR_PS 13/14 833 855 .. 1 24 [] 10.4 54 LRR_TYP 17/18 833 856 .. 1 24 [] 28.2 0.0011 LRR_PS 14/14 857 879 .. 1 24 [] 3.2 4.6e+02 LRR_TYP 18/18 857 880 .. 1 24 [] 24.9 0.011 LRRCT 4/4 892 941 .. 1 55 [] 61.2 1.3e-13 EGF_CA 1/9 951 988 .. 1 34 [] 25.4 0.0012 EGF 1/9 954 988 .. 1 32 [] 38.9 7e-07 EGF_CA 2/9 990 1029 .. 1 34 [] 15.5 0.02 EGF 2/9 993 1029 .. 1 32 [] 33.8 2.3e-05 EGF 3/9 1034 1067 .. 1 32 [] 27.3 0.0022 EGF_CA 3/9 1031 1067 .. 1 34 [] 44.5 1.4e-08 EGF_CA 4/9 1070 1107 .. 1 34 [] 18.5 0.0086 EGF 4/9 1072 1107 .. 1 32 [] 31.0 0.00016 EGF_CA 5/9 1109 1145 .. 1 34 [] 42.7 4.8e-08 EGF 5/9 1112 1145 .. 1 32 [] 36.5 3.7e-06 EGF_CA 6/9 1154 1186 .. 1 34 [] 5.3 0.37 EGF 6/9 1153 1186 .. 1 32 [] 23.8 0.024 LamG 1/1 1209 1345 .. 1 137 [] 141.7 7.9e-38 EGF_CA 7/9 1365 1397 .. 1 34 [] -6.4 10 EGF 7/9 1364 1397 .. 1 32 [] 25.2 0.009 EGF_CA 8/9 1404 1436 .. 1 34 [] 1.0 1.2 EGF 8/9 1403 1436 .. 1 32 [] 26.2 0.0046 EGF_CA 9/9 1445 1477 .. 1 34 [] -3.5 4.5 EGF 9/9 1444 1477 .. 1 32 [] 27.6 0.0017 CT 1/1 1488 1557 .] 1 94 [] 25.7 0.00039 Alignments of top-scoring domains: LRRNT: domain 1 of 4, from 59 to 91: score 44.5, E = 1.4e-08 *->qCPapCtCspdfgtaVdCsgrgLttlevPldlPadttl<-* +CPa CtC+ gt+VdC+g gL+ ++P+ +P++t+ mKIAA0813 59 ACPALCTCT---GTTVDCHGTGLQ--AIPKNIPRNTER 91 LRR_TYP: domain 1 of 18, from 85 to 109: score 7.3, E = 53 *->LpnL.reLdLsnNqLtsLPpgaFqg<-* p +++L L++N++t+++ + F+g mKIAA0813 85 IPRNtERLELNGNNITRIHKNDFAG 109 LRR_PS: domain 1 of 14, from 110 to 132: score 0.4, E = 1.1e+03 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L+vL L +N++ + ++ mKIAA0813 110 LKQLRVLQLMENQIG-AVERGAFD 132 LRR_TYP: domain 2 of 18, from 110 to 133: score 15.4, E = 5.5 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +Lr+L L Nq+ ++ +gaF++ mKIAA0813 110 LKQLRVLQLMENQIGAVERGAFDD 133 LRR_PS: domain 2 of 14, from 134 to 156: score 13.9, E = 19 *->LtsLqvLdLsnNnLsGeIPsslgn<-* ++ L++L+L+ N+L +P+ l++ mKIAA0813 134 MKELERLRLNRNQLQ-VLPELLFQ 156 LRR_TYP: domain 3 of 18, from 134 to 157: score 27.2, E = 0.0023 *->LpnLreLdLsnNqLtsLPpgaFqg<-* + +L++L+L++NqL+ LP+ +Fq+ mKIAA0813 134 MKELERLRLNRNQLQVLPELLFQN 157 LRR_TYP: domain 4 of 18, from 159 to 181: score 14.5, E = 7.1 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +L +LdLs N L+++P+ aF+g mKIAA0813 159 -QALSRLDLSENFLQAVPRKAFRG 181 LRR_SD22: domain 1 of 8, from 182 to 203: score 3.4, E = 3.1e+02 *->LtnLeeLdLsqNkIkkiENLde<-* t L++L L +N+I++iE mKIAA0813 182 ATDLKNLQLDKNRISCIEEGAF 203 LRR_TYP: domain 5 of 18, from 183 to 205: score 7.8, E = 47 *->LpnLreLdLsnNqLtsLPpgaFqg<-* + L+ L L+ N+++ + +gaF+ mKIAA0813 183 -TDLKNLQLDKNRISCIEEGAFRA 205 LRR_PS: domain 3 of 14, from 206 to 228: score 20.1, E = 0.31 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L+ L+vL L+nNn++ +IP s +n mKIAA0813 206 LRGLEVLTLNNNNIT-TIPVSSFN 228 [output cut off at A = 10 top alignments] //