hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg07446/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0811 ( 1654 res) mbg07446 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CA Cadherin repeats. 630.9 4.4e-185 9 LamG Laminin G domain 109.7 3.2e-28 1 EGF Epidermal growth factor-like domain. 54.4 1.4e-11 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CA 1/9 17 100 .. 1 121 [] 62.2 6.5e-14 CA 2/9 124 209 .. 1 121 [] 101.1 1.3e-25 CA 3/9 233 314 .. 1 121 [] 78.2 9.9e-19 CA 4/9 338 416 .. 1 121 [] 106.0 4.3e-27 CA 5/9 440 521 .. 1 121 [] 73.8 2.1e-17 CA 6/9 546 624 .. 1 121 [] 56.3 4.1e-12 CA 7/9 648 729 .. 1 121 [] 111.7 8.3e-29 CA 8/9 753 834 .. 1 121 [] 56.4 3.8e-12 CA 9/9 858 932 .. 1 121 [] 12.4 0.14 LamG 1/1 1097 1226 .. 1 137 [] 109.7 3.2e-28 EGF 1/2 1255 1289 .. 1 32 [] 31.9 8.8e-05 EGF 2/2 1294 1327 .. 1 32 [] 30.5 0.00022 Alignments of top-scoring domains: CA: domain 1 of 9, from 17 to 100: score 62.2, E = 6.5e-14 *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet v+A+ a ++ + Ys+++++++++++++ Fs+d++t mKIAA0811 17 VKAVAAQDP-------------IIYSLVQgttpesnsddVFSLDQDT 50 GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp G +++++k+ D+E++ ++Y++ A + mKIAA0811 51 G-----------VLKVKKAMDHEST---------KWYQIDLMAHCPHEDT 80 pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-* l s ++v+++V+DvNDN+P mKIAA0811 81 --------------DLVSLVSVNIQVEDVNDNRP 100 CA: domain 2 of 9, from 124 to 209: score 101.1, E = 1.3e-25 *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt v+A D D+g + g+ v+Y+++ +++++ ++lF++d+e+G mKIAA0811 124 VTANDQDTG---SDGQ------VSYRLSVepgsnihqLFAVDSESG- 160 ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg +itt+++LD E+q ++Y++ v+A D+G+ mKIAA0811 161 ----------WITTLQELDCETQ---------QTYRFYVVAFDHGQTI-- 189 dssptrksqqtpplsstatvtvtVlDvNDNaP<-* +lss+a v v ++D+NDN+P mKIAA0811 190 ------------QLSSQALVEVSITDENDNPP 209 CA: domain 3 of 9, from 233 to 314: score 78.2, E = 9.9e-19 *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp ++ DaD ++N + vt+ i+++++ ++FsI + + mKIAA0811 233 LKTLDADIS--EQNRQ------VTCYITEgdplgQFSISQVGD---- 267 sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss e+ it++k+LDRE + ++Y L+++A+Dg mKIAA0811 268 -----EWRITSRKTLDREHI---------AKYLLRITASDGK-------- 295 ptrksqqtpplsstatvtvtVlDvNDNaP<-* ++++++v v+VlD+NDN P mKIAA0811 296 ----------FQASVPVEVFVLDINDNSP 314 CA: domain 4 of 9, from 338 to 416: score 106.0, E = 4.3e-27 *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps vsA+D D + +N++ +tYs+ +++ + F++dp+tG mKIAA0811 338 VSAIDVDMD---TNAQ------ITYSLHGpgaqEFKLDPHTG----- 370 LvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp ++tt+ LDRE + ++Y+L+ +AtDgGg mKIAA0811 371 ------ELTTLSVLDRERK---------DVYNLVAKATDGGG-------- 397 trksqqtpplsstatvtvtVlDvNDNaP<-* +s +a+vt +++DvNDNaP mKIAA0811 398 ---------QSCQAEVTLHIEDVNDNAP 416 CA: domain 5 of 9, from 440 to 521: score 73.8, E = 2.1e-17 *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps v A+D+D+g N++ v+Ys++++ +++FsId+++G mKIAA0811 440 VFARDPDQG---VNAQ------VVYSLTDsadgQFSIDATSG----- 472 LvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp +i++ kpL + s +Ltv+A+D G+p p mKIAA0811 473 ------VIRLEKPLQVRSS---------SAVELTVRASDLGTPIP----- 502 trksqqtpplsstatvtvtVlDvNDNaP<-* ls+ tvtv ++ D P mKIAA0811 503 ---------LSTLGTVTVSIVGLEDYLP 521 CA: domain 6 of 9, from 546 to 624: score 56.3, E = 4.1e-12 *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp + t + s+ k Y+i++++++++F++d++tG mKIAA0811 546 ATLTRPGSE------K------TGYHITGgneqgKFRLDAHTG---- 576 sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss i++++++LD+E+ ++Y L +e + + + + mKIAA0811 577 -------ILYVNGSLDFETN---------PKYFLSIECSRKSSSS----- 605 ptrksqqtpplsstatvtvtVlDvNDNaP<-* ls+ +t++++V+DvN++ P mKIAA0811 606 ----------LSDVTTIVINVTDVNEHHP 624 CA: domain 7 of 9, from 648 to 729: score 111.7, E = 8.3e-29 *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp vsA+D D + N+ +tYs++++++ ++F+Idp+ G mKIAA0811 648 VSASDDDGP---VNSV------ITYSLVGgnqlgHFTIDPKKG---- 681 sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss + ++k+LD E++ ++Y+L+++AtD+G+pp mKIAA0811 682 -------KLQVAKALDWEQT---------PSYSLRIRATDSGQPP----- 710 ptrksqqtpplsstatvtvtVlDvNDNaP<-* l ++v v+V+DvNDN+P mKIAA0811 711 ----------LHEDTEVAVEVVDVNDNPP 729 CA: domain 8 of 9, from 753 to 834: score 56.4, E = 3.8e-12 *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp + D+Ds+ +Ng p ++i+++++++ F++ p++ mKIAA0811 753 LILDDPDSP---QNGPP-----YFFRITEgntgsVFRVTPDG----- 786 sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss +++t+++L R +q ++Y+L +e++D+G pp mKIAA0811 787 -------WLVTAGSLSRRAQ---------EWYQLHIEVSDSGLPP----- 815 ptrksqqtpplsstatvtvtVlDvNDNaP<-* lss++ v+v+++ + +P mKIAA0811 816 ----------LSSSTLVRVHITEQSRYPP 834 CA: domain 9 of 9, from 858 to 932: score 12.4, E = 0.14 *->vsAtDaDsgsngeNgkpgdaevvtYsils......lFsIdpetGtng ++AtD+D +tYs+ ++++ +++F++ ++ G mKIAA0811 858 IHATDRDPQ-----DT------LTYSLDRegslgkYFTVGASDG--- 890 psLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgds i++++ L R +Y ++v+++Dg mKIAA0811 891 --------KIIASQGLPR------------GRYLFNVTVSDGT------- 913 sptrksqqtpplsstatvtvtVlDvNDNaP<-* +++t+ v+v+V aP mKIAA0811 914 -----------FTTTTGVHVHVWHMGQEAP 932 LamG: domain 1 of 1, from 1097 to 1226: score 109.7, E = 3.2e-28 *->t.lsisfsFrTtspnGlLlyagggdflaleLvlEDsdgdGrlvlryd ++++i+f+++T +p++lL+++ + ++l L +G+l+l+y+ mKIAA0811 1097 QnWQIHFYLKTLQPWALLMFTNETASISLKLA------NGFLHLEYR 1137 lGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpvs + + g + l+s+ +p+nDGqWH++ +e ++sv+L VD ++ +s mKIAA0811 1138 CPG---GFYGNLSSH----RPVNDGQWHSMLLEERDTSVHLLVDITDNTS 1180 ges....t.LdldkeesgplylGGlPe....lpvspgFrGCirnlrvngk +++++ ++L ++ l lGGl +++++++vs gF GC+ ++vn++ mKIAA0811 1181 LVIpeecQgLRTE----RHLLLGGLVPsnpsSNVSLGFEGCLDAVVVNSE 1226 <-* mKIAA0811 - - [output cut off at A = 10 top alignments] //