hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg07446/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0811 ( 1654 res) mbg07446 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Cadherin Cadherin domain 502.0 4.5e-147 9 Laminin_G_2 Laminin G domain 102.5 8.3e-27 1 EGF EGF-like domain 73.7 3.8e-18 2 Laminin_G_1 Laminin G domain 21.6 0.00013 1 EGF_2 EGF-like domain 18.0 0.21 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Cadherin 1/9 1 93 [. 1 107 [] 24.4 0.0026 Cadherin 2/9 107 202 .. 1 107 [] 74.9 1.7e-18 Cadherin 3/9 216 307 .. 1 107 [] 50.2 4.6e-11 Cadherin 4/9 321 409 .. 1 107 [] 91.1 2.3e-23 Cadherin 5/9 424 514 .. 1 107 [] 67.3 3.2e-16 Cadherin 6/9 528 617 .. 1 107 [] 39.0 1.1e-07 Cadherin 7/9 631 722 .. 1 107 [] 97.0 3.8e-25 Cadherin 8/9 736 827 .. 1 107 [] 74.5 2.1e-18 Cadherin 9/9 841 925 .. 1 107 [] 12.9 0.089 Laminin_G_2 1/1 1105 1226 .. 1 141 [] 102.5 8.3e-27 Laminin_G_1 1/1 1105 1229 .. 1 154 [] 21.6 0.00013 EGF 1/2 1256 1288 .. 1 39 [] 41.5 1.8e-08 EGF_2 1/2 1256 1288 .. 1 37 [] 7.8 2.9 EGF 2/2 1295 1326 .. 1 39 [] 40.2 4.8e-08 EGF_2 2/2 1295 1326 .. 1 37 [] 18.5 0.16 Alignments of top-scoring domains: Cadherin: domain 1 of 9, from 1 to 93: score 24.4, E = 0.0026 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... ++s +E+ p G+e+++v+A+ a+dP i Ys+++g +++++ mKIAA0811 1 -TFSASEDLPEGSEIGSVKAVAAQDP------IIYSLVQGTTpesns 40 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveA....tDadpll ++ F++d+dtG+ ++++k D E++ +Y + ++A+ ++ D mKIAA0811 41 DDVFSLDQDTGV----LKVKKAMDHEST--KWYQIDLMAhcphEDT---- 80 asgggpplsstatvtitVl<-* l s ++v+i+V+ mKIAA0811 81 ------DLVSLVSVNIQVE 93 Cadherin: domain 2 of 9, from 107 to 202: score 74.9, E = 1.7e-18 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y a + En p Gt+v++vtA D D +g g+++Y+++ + ++ + mKIAA0811 107 YKAFLTENMPGGTTVIQVTANDQD--TGSDGQVSYRLSVEPGsniHQ 151 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp F++d+++G+ i+t ++LD+E++ ++Y+++v+A D+ g + mKIAA0811 152 LFAVDSESGW----ITTLQELDCETQ--QTYRFYVVAFDH------GQTI 189 plsstatvtitVl<-* lss a v ++++ mKIAA0811 190 QLSSQALVEVSIT 202 Cadherin: domain 3 of 9, from 216 to 307: score 50.2, E = 4.6e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y +sv En +G v+t++ DaD + +N +++ i++g+p g+F+ mKIAA0811 216 YRGSVVENNEPGELVATLKTLDADI-SEQNRQVTCYITEGDPLGQFS 261 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls I + Gd+ + i+ +k LDRE+i +Y L + A+D+ mKIAA0811 262 ISQ-VGDEWR-ITSRKTLDREHI--AKYLLRITASDG----------KFQ 297 statvtitVl<-* + ++v + Vl mKIAA0811 298 ASVPVEVFVL 307 Cadherin: domain 4 of 9, from 321 to 409: score 91.1, E = 2.3e-23 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y++ v+E++ +G ++l v A+D D +N++i+Ys+ g++ ++ F+ mKIAA0811 321 YTGKVREDVTPGHFILKVSAIDVD--MDTNAQITYSLHGPG-AQEFK 364 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +dp+tG+ ++t LDRE + Y+L+ +AtD++ ++s mKIAA0811 365 LDPHTGE----LTTLSVLDRERK--DVYNLVAKATDGG---------GQS 399 statvtitVl<-* + a+vt +++ mKIAA0811 400 CQAEVTLHIE 409 Cadherin: domain 5 of 9, from 424 to 514: score 67.3, E = 3.2e-16 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +a + +++ t+v++v A+D+D +g N++++Ys++ +g+F+ mKIAA0811 424 AVAVFDNTTV-KTPVAVVFARDPD--QGVNAQVVYSLTDSA-DGQFS 466 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls Id +G+ i++ kpL + + +eLtv+A+D g + pls mKIAA0811 467 IDATSGV----IRLEKPLQVRSS--SAVELTVRASDL------GTPIPLS 504 statvtitVl<-* + +tvt+++ mKIAA0811 505 TLGTVTVSIV 514 Cadherin: domain 6 of 9, from 528 to 617: score 39.0, E = 1.1e-07 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s +vpE+a + ev + At + ++ Y i+ggn+ g+Fr mKIAA0811 528 HSTQVPEDALIDMEV-LYLATLTR---PGSEKTGYHITGGNEQGKFR 570 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +d +tG +++ +LD E+ ++Y L++e++ + +ls mKIAA0811 571 LDAHTGI----LYVNGSLDFETN--PKYFLSIECSRK-------SSSSLS 607 statvtitVl<-* +++t++i+V+ mKIAA0811 608 DVTTIVINVT 617 Cadherin: domain 7 of 9, from 631 to 722: score 97.0, E = 3.8e-25 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y+++v Ena vG +ltv A+D D + N+ i+Ys++ggn g+F+ mKIAA0811 631 YTVRVLENAIVGDVILTVSASDDD--GPVNSVITYSLVGGNQLGHFT 675 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls Idp+ G + ++k LD E++ + Y+L ++AtD+ g+ppl mKIAA0811 676 IDPKKGK----LQVAKALDWEQT--PSYSLRIRATDS-------GQPPLH 712 statvtitVl<-* ++v ++V mKIAA0811 713 EDTEVAVEVV 722 Cadherin: domain 8 of 9, from 736 to 827: score 74.5, E = 2.1e-18 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgri.rYsilggnpggwF ys v En+p+G +vl++ D+D +++Ng + +++i++gn g F mKIAA0811 736 YSTAVQENSPIGIKVLQLILDDPD--SPQNGPPyFFRITEGNTGSVF 780 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl r++p +G+ + t+ +L R ++ ++Y L++e++D+ g ppl mKIAA0811 781 RVTP-DGW----LVTAGSLSRRAQ--EWYQLHIEVSDS-------GLPPL 816 sstatvtitVl<-* ss + v+++++ mKIAA0811 817 SSSTLVRVHIT 827 Cadherin: domain 9 of 9, from 841 to 925: score 12.9, E = 0.089 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.ggwF ++ E + G +v+ ++AtD+D p ++Ys+ + ++ g+ F mKIAA0811 841 IFITKGEEEFQGGMVGKIHATDRD----PQDTLTYSLDREGSlGKYF 883 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl ++ +G i + L R g+Y ++v ++D+ mKIAA0811 884 TVGASDGK----IIASQGLPR-----GRYLFNVTVSDG----------TF 914 sstatvtitVl<-* ++t+ v+++V mKIAA0811 915 TTTTGVHVHVW 925 Laminin_G_2: domain 1 of 1, from 1105 to 1226: score 102.5, E = 8.3e-27 *->FRTatqpnGlLlyaggk.glpdtadpksdKflaLeLvdGrlvlrydl ++T qp +lL+++ + ++L L +G l+l+y++ mKIAA0811 1105 LKT-LQPWALLMFTNETaS------------ISLKLANGFLHLEYRC 1138 Gsgg.vlltsg.klnDGqWHtVsverngrsvtLsVDgg.vv.g.spgssd +g l+s++++nDGqWH+ +e +++sv+L VD ++ + p++ + mKIAA0811 1139 PGGFyGNLSSHrPVNDGQWHSMLLEERDTSVHLLVDITdNTsLvIPEECQ 1188 tlslnlngplylGGlpessksslltltaaqnlvvvs.gFvGCirdvring l ++++l lGGl++s+ ss++ s gF+GC+ v++n+ mKIAA0811 1189 --GLRTERHLLLGGLVPSNPSSNV-----------SlGFEGCLDAVVVNS 1225 e<-* e mKIAA0811 1226 E 1226 Laminin_G_1: domain 1 of 1, from 1105 to 1229: score 21.6, E = 0.00013 *->FRTtepsGlLllgYnGtntdrrgkkeigdDFlaleLvdGrlevsydl +T +p +lL+ + + + + +l+L +G+l++ y mKIAA0811 1105 LKTLQPWALLM--FTNETASI-----------SLKLANGFLHLEYRC 1138 GsghrlrpavvrsgdrvlnDGkWHrvelerngrkgtLsVdgeervvdges g + + + s + +nDG+WH+ le +++ L Vd +++ ++ mKIAA0811 1139 PGG---FYGNLSSHRP-VNDGQWHSMLLEERDTSVHLLVDITDN---TSL 1181 psgpditsenLdldtppiLyvGGlPelqksvkrrlaaistsFkGCirdvs +++ + + l+t++ L +GGl +++ ++s +F+GC+ v+ mKIAA0811 1182 VIPEEC----QGLRTERHLLLGGLV-----PSNPSSNVSLGFEGCLDAVV 1222 ingkpld<-* +n++ l+ mKIAA0811 1223 VNSERLE 1229 EGF: domain 1 of 2, from 1256 to 1288: score 41.5, E = 1.8e-08 *->CspnngpCsngGtCvdtpg.gytCeCppGdyfllytGkrC<-* Cs+n pC+ngG C + g+gy C+Cpp ++G++C mKIAA0811 1256 CSQN--PCLNGGSCSPALGsGYLCRCPPL-----FSGRNC 1288 EGF_2: domain 1 of 2, from 1256 to 1288: score 7.8, E = 2.9 *->C....CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C++++C + +G C p +s C C++ ++G C mKIAA0811 1256 CsqnpCLN-GGSCS-PALGS--GYLCRCPPL----FSGRNC 1288 EGF: domain 2 of 2, from 1295 to 1326: score 40.2, E = 4.8e-08 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C++ pC+ gGtCv++p+g +C Cp++ ytG+rC mKIAA0811 1295 CTSA--PCQEGGTCVSSPEGTSCSCPHP-----YTGDRC 1326 EGF_2: domain 2 of 2, from 1295 to 1326: score 18.5, E = 0.16 *->C....CngshGtCvs.pngtstpcgkCvCdsgyedkyqGadC<-* C++ +C++ +GtCvs+p+gts C+C+ + y+G+ C mKIAA0811 1295 CtsapCQE-GGTCVSsPEGTS-----CSCPHP----YTGDRC 1326 //