hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp01279/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0809  ( 1368 res)   mbp01279

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d    81.8    8.4e-20   1
HELICc   helicase superfamily c-terminal domain          72.8    4.3e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1     168   421 ..     1   219 []    81.8  8.4e-20
HELICc     1/1     652   755 ..     1    86 []    72.8  4.3e-17

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 168 to 421: score 81.8, E = 8.4e-20
                   *->gf.klrpyQkeaipwlleg.............rdvilaapTGsGKTl
                      + +   p+Q  +i++l+++  ++ ++ +++++ ++ila+ +G+GKTl
   mKIAA0809   168    LArAVKPHQIGGIRFLYDNlveslerfktssgFGCILAHSMGLGKTL 214  

                   afllpllellkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpsl
                    ++++ ++ l ++        ++++vL +vP     ++w  e++ ++p  
   mKIAA0809   215 -QVISFIDVLFRHT-------PAKTVLAIVP-VNTLQNWLAEFNMWLPA- 254  

                   gvyfv.............evlkvvglygG.skt.ke.keqlrklksgktd
                       ++  + ++++++  +++ +v ++ ++ kt + + +  +++ s+   
   mKIAA0809   255 ----PealpadskpeevqPRFFKVHILNDeHKTvASrAKVTADWVSEG-G 299  

                   ilvtTpg.........................rLldll.ngkg.......
                   +l++ ++  +  + +++  ++++++++++++++++dl +++++++ +++ 
   mKIAA0809   300 VLLMGYEmyrlltlkkslatsrpkktkkrshpVIIDLDeEDRQqefrref 349  

                   ...lsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrll
                   ++ l  +  d+vi+DE+Hr+++        ++++   l + +  +r+r++
   mKIAA0809   350 ekaLCRpGPDVVICDEGHRIKN-------CQASTSQaLKNIR--SRRRVV 390  

                   lSATppeienllklflnlpelfpnpvfisvgftlepieqf<-*
                   l++ p  ++n+l +++        + f++++f l  +++f   
   mKIAA0809   391 LTGYP--LQNNLIEYWC------MVDFVRPDF-LGTRQEF    421  

HELICc: domain 1 of 1, from 652 to 755: score 72.8, E = 4.3e-17
                   *->delaelLkellkd..............pgikvarlHGglsqeeReei
                        ++e+L ++ +   ++ +++++++   +++++rl+G++++ eRe++
   mKIAA0809   652    ALIEEFLGKRDMPclpgaegqgtqkwvRNVSYFRLDGSTPAFERERL 698  

                   lekFrkgki....kvLvaTdvaerGlDipgvdlVInydlpwspasyiQRi
                   +++F++  + ++  +L++T+++ +G+++ g+++V+ +d+ w+p  + Q++
   mKIAA0809   699 INQFNDPSNlttwLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAV 748  

                   GRaGRaG<-*
                    R+ R+G   
   mKIAA0809   749 CRVYRYG    755  

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