hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp01279/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0809  ( 1368 res)   mbp01279

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SNF2_N     SNF2 family N-terminal domain                250.3    2.7e-71   1
Helicase_C Helicase conserved C-terminal domain          80.0    4.9e-20   1
ResIII     Type III restriction enzyme, res subunit     -34.6       0.24   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
ResIII       1/1     170   397 ..     1   244 []   -34.6     0.24
SNF2_N       1/1     175   529 ..     1   356 []   250.3  2.7e-71
Helicase_C   1/1     675   755 ..     1    76 []    80.0  4.9e-20

Alignments of top-scoring domains:
ResIII: domain 1 of 1, from 170 to 397: score -34.6, E = 0.24
                   *->iklRpyQeeAierllesiekgelrlatglkd.kdkkkrgli.vmATG
                          p+Q+  i+ l  ++ +        l++ k+    g+i ++  G
   mKIAA0809   170    RAVKPHQIGGIRFLYDNLVES-------LERfKTSSGFGCIlAHSMG 209  

                   sGKTltaakiliarllkkqq.klkhgriddskvLFlVprkdLleQaleeF
                    GKTl  ++ +i+ l+++ + k          vL +Vp ++L + +l eF
   mKIAA0809   210 LGKTLQVIS-FIDVLFRHTPaK---------TVLAIVPVNTL-QNWLAEF 248  

                   ....................tkfeskkkkef.knpg..vdkklkvltdnq
                   +   + ++  + ++++++ + +f++ +++  +++ + +++k  +  + ++
   mKIAA0809   249 nmwlpapealpadskpeevqPRFFKVHILNDeHKTVasRAKVTADWVSEG 298  

                   kdsalegkskkndieiifttiQkLskalklgkendeeekskstes.vv.g
                   +++  + +               +++ l+l       +ks++t ++++++
   mKIAA0809   299 GVLLMGYE---------------MYRLLTL-------KKSLATSRpKKtK 326  

                   lrlav.esleflldefd................liIiDEaHrs...sakt
                   +r+ + +      d+  + +++ ++   +++++++I+DE Hr+++ +a+t
   mKIAA0809   327 KRSHPvIIDLDEEDRQQefrrefekalcrpgpdVVICDEGHRIkncQAST 376  

                   ksakededatklevyrkilekwelelnkkyfkpaflLGlTATPer<-*
                                  +++++           ++  ++ lT+ P     
   mKIAA0809   377 --------------SQALKN----------IRSRRRVVLTGYPLQ    397  

SNF2_N: domain 1 of 1, from 175 to 529: score 250.3, E = 2.7e-71
                   *->YQleGvnWLislyknlvkkendslglggILADEMGLGKTlQtIslla
                      +Q+ G+++L++ + ++  + + s g g+ILA+ MGLGKTlQ+Is++ 
   mKIAA0809   175    HQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFID 221  

                   ylkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgn
                    l +  p +    +++L ++P +tl+nWl Ef  w+p      + ++  +
   mKIAA0809   222 VLFRHTP-A----KTVLAIVPVNTLQNWLAEFNMWLP-----APEALPAD 261  

                   srdqi...................rkdellrnvlkdggrlkfdvlitsYe
                   s++ + +++  + +  ++++++   ++++  ++++ g     +vl+ +Ye
   mKIAA0809   262 SKPEEvqprffkvhilndehktvaSRAKVTADWVSEG-----GVLLMGYE 306  

                   iirkNkLl...............................kdkdeLkklei
                   ++r   L  +++  +++++++++++++   + +++++++  + e++k  +
   mKIAA0809   307 MYRL--LTlkkslatsrpkktkkrshpviidldeedrqqEFRREFEK--A 352  

                   nw....ryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQN
                     +++++ vi+DEG HriKN+++ +  s+alk+++ +++R+ LTG PlQN
   mKIAA0809   353 LCrpgpDVVICDEG-HRIKNCQAST--SQALKNIR-SRRRVVLTGYPLQN 398  

                   nLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadk
                   nL E+w++++F++P+++g++       ++F ++f++pi++g++     d+
   mKIAA0809   399 NLIEYWCMVDFVRPDFLGTR-------QEFSNMFERPILNGQC----IDS 437  

                   teaLrreknveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvl
                   t       +v+++  + + Lh +l  f++RR  + +  +Lp+  K e v+
   mKIAA0809   438 T-----PQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPA--KEENVI 480  

                   fcelsklQkelYkkflkgeskdvkaindserreggkeknegksrllnlim
                    ++ls +Q++lY++f    ++  + +++     g ++      ++l ++ 
   mKIAA0809   481 LVRLSQIQRDLYTQFM---DRFRDCGTS-----GWLG-----LNPLKAFC 517  

                   qLrKicNfHPyLf<-*
                      Ki+N HP+++   
   mKIAA0809   518 VCCKIWN-HPDVL    529  

Helicase_C: domain 1 of 1, from 675 to 755: score 80.0, E = 4.9e-20
                   *->ll.epgikvarlhGglsqeeReeilekFrsgks....kvLvaTdvaa
                      +   ++++++rl+G++++ eRe+++++F++ ++ ++  +L++T+++ 
   mKIAA0809   675    QKwVRNVSYFRLDGSTPAFERERLINQFNDPSNlttwLFLLSTRAGC 721  

                   rGlDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   +G+++ ++n+V+ +d+ wnp  + Q++ R++R+G   
   mKIAA0809   722 LGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYG    755  

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