hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg07407/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0807 ( 1432 res) mbg07407 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pkinase Protein kinase domain 275.9 5.1e-79 1 Pkinase_C Protein kinase C terminal domain 35.6 1.2e-06 1 PDZ PDZ domain (Also known as DHR or GLGF) 27.3 0.00035 1 Pkinase_Tyr Protein tyrosine kinase -16.4 7.4e-11 1 APH Phosphotransferase enzyme family -16.5 0.53 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- APH 1/1 154 337 .. 1 256 [] -16.5 0.53 Pkinase 1/1 152 425 .. 1 287 [] 275.9 5.1e-79 Pkinase_Tyr 1/1 152 425 .. 1 272 [] -16.4 7.4e-11 Pkinase_C 1/1 443 488 .. 1 47 [] 35.6 1.2e-06 PDZ 1/1 741 826 .. 1 82 [] 27.3 0.00035 Alignments of top-scoring domains: APH: domain 1 of 1, from 154 to 337: score -16.5, E = 0.53 *->elrplsgGasnrtylvttgd.gdapryvlrlappgeaaeelerEaav +++ +s Ga ++++lv++ ++ +++ + +++ +l ++ mKIAA0807 154 TIKLISNGAYGAVFLVRHKStR--QCFAMKKINKQ----NLILRNQI 194 lrhLaalgipvpvpvPrvlaggtdgeglgl.....pfllleglpGevlsr +++ +++i + P v+ ++ +++++++ ++e+++G + ++ mKIAA0807 195 QQAFVERDILTFAENPFVVS-----MFCSFetkrhLCMVMEYVEGGDCAT 239 pnalspaerpallealarlLarLHqvd.ppalplarrlerrlkllrqlaa + ++ alp + + l++++ ++a mKIAA0807 240 ------------------------LLKnIGALPVDMVR---LYFAETVLA 262 alarlvaaelldeerglllelaerllaaleallpppvlvHGDlhpgNvlv + l+ ++vH+Dl p+N+l+ mKIAA0807 263 L------EYLHN-----------------------YGIVHRDLKPDNLLI 283 ddapdggrvsGvIDfedaglGdpayDlAmllrslfgeefgpefldaylaa + + g + Df+ + +G l +l +l+ + + ++ + + mKIAA0807 284 T--SMGHIK--LTDFGLSKIG-----LMSLTTNLYEGHIEKDAREFLDKQ 324 ygrqfaapglerlrel<-* + + p++ + + + mKIAA0807 325 VC---GTPEYIAPEVI 337 Pkinase: domain 1 of 1, from 152 to 425: score 275.9, E = 5.1e-79 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar +e+++ + G++G V++ +hk+t++ +A+K+i+k++ + ++ ++a+ mKIAA0807 152 FETIKLISNGAYGAVFLVRHKSTRQCFAMKKINKQnLILRNQIQQAF 198 rrsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLfdyls E il p++v ++++fe+k+hl++V+Ey+egG d ++l+ mKIAA0807 199 V--ERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEGG----DCATLLK 242 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldeng + g+l + d ++ ++ +++ +leYLH+ gi+HRDLKP+N+L+ + g mKIAA0807 243 ---NIGAL--PVDMVRLYFAETVLALEYLHNYGIVHRDLKPDNLLITSMG 287 vvdaflKiaDFGlAkkls............t.sss.l..ttfvGTpwYmA ++ K++DFGl+k + +++ +++ ++ +++ ++ ++GTp+Y+A mKIAA0807 288 HI----KLTDFGLSKIGLmslttnlyeghiEkDAReFldKQVCGTPEYIA 333 PEvllggngygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirki PEv+l ++gyg++vD+W++G+ilye+l G PF g+ ++ +l+ ++ mKIAA0807 334 PEVIL-RQGYGKPVDWWAMGIILYEFLVGCVPFFGD-----TPEELFGQV 377 lgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRlt... + e+ +pe d+ +l+++a+dL +k+L+++P +Rl++++ mKIAA0807 378 IS--DEIVWPEGDD----------ALPPDAQDLTSKLLHQNPLERLGtss 415 aeeilqHPwf<-* a e++qHP+f mKIAA0807 416 AYEVKQHPFF 425 Pkinase_Tyr: domain 1 of 1, from 152 to 425: score -16.4, E = 7.4e-11 *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtL.ke.igassee ++ +k + Ga+G V++ + k +t++ A K+++k+++ + mKIAA0807 152 FETIKLISNGAYGAVFLVRHK----STRQCFAMKKInKQnLILRNQI 194 ieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegG +++F + + ++ +p +V++ + ++++ l++V+Ey+egG mKIAA0807 195 --QQAFVE--RDILTFAENPFVVSMF-CSFETKRH----LCMVMEYVEGG 235 dLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcL d + L++ ++L++ + + ++ ++eYL++ ++vHRDL N L mKIAA0807 236 DCATLLKN---IGALPVDMVRLYFAETVLALEYLHNYGIVHRDLKPDNLL 282 VsenlvVKIsDFGLaRdiynddyYvrkkgggklPv............... +++ +++K +DFGL++ ++ l + +++ +++ ++ mKIAA0807 283 ITSMGHIKLTDFGLSKIG-------LMS----LTTnlyeghiekdarefl 321 ........kWmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgms +++ +++ APE++ + D W+ G+ L+E + + P + g + mKIAA0807 322 dkqvcgtpEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGC-VP-FFGDT 369 neevlellyedGyRL.....prPenCPdelYdlMlqCWaedPedRP...t +ee++ ++ +++ ++++++ P++ dl + + +P +R ++++ mKIAA0807 370 PEELFGQV-ISDEIVwpegdDAL---PPDAQDLTSKLLHQNPLERLgtsS 415 Fsel..verL<-* e++++ ++ mKIAA0807 416 AYEVkqHPFF 425 Pkinase_C: domain 1 of 1, from 443 to 488: score 35.6, E = 1.2e-06 *->kvksptDTsNFDpeFTsepptltpppdsr.lssgkqleFvGFtYvnp +++s++DTs+FD+ ++++++++ d+++ s+ le ++F+ ++p mKIAA0807 443 QLESEDDTSYFDTRSERYHHVDS--EDEEeVSEDGCLEIRQFSSCSP 487 e<-* mKIAA0807 488 R 488 PDZ: domain 1 of 1, from 741 to 826: score 27.3, E = 0.00035 *->evtlekevkrgglGfsikggsdk.........givvsevlpGsgaAe +++++ + + Gf+++ ++++ + + v +v G g+A mKIAA0807 741 PIIIHR--AGKKYGFTLRAIRVYmgdtdvytvHHMVWHVEDG-GPAS 784 agGrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-* +G L+ GD I+ vNG++v +l h ++v++ +sg+ +v++ mKIAA0807 785 EAG-LRQGDLITHVNGEPVHGLVHTEVVELVLKSGN-KVSISTT 826 //