hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj52037/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0806  ( 702 res)   mfj52037

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IG       Immunoglobulin                                 139.8    2.8e-37   3
IGc2     Immunoglobulin C-2 Type                        126.0    4.2e-33   3
LRRCT    Leucine rich repeat C-terminal domain           41.8    9.3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRRCT      1/1      97   147 ..     1    55 []    41.8  9.3e-08
IGc2       1/3     164   241 ..     1    56 []    24.4    0.016
IG         1/3     158   253 ..     1    58 []    47.0  2.5e-09
IGc2       2/3     268   336 ..     1    56 []    49.5  4.4e-10
IG         2/3     262   347 ..     1    58 []    47.0  2.5e-09
IGc2       3/3     362   427 ..     1    56 []    52.1  7.2e-11
IG         3/3     356   438 ..     1    58 []    45.8  5.7e-09

Alignments of top-scoring domains:
LRRCT: domain 1 of 1, from 97 to 147: score 41.8, E = 9.3e-08
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                       ++ CDC+L+wLl+wl +  n  ++    ++ Ca+Pe+l+Gq +l +
   mKIAA0806    97    SSLLCDCHLKWLLQWLVD--NNFHHSV--NVSCAHPEWLAGQSILNV 139  

                   lpsefsCp<-*
                     ++f+C+   
   mKIAA0806   140 DLKDFVCD    147  

IGc2: domain 1 of 3, from 164 to 241: score 24.4, E = 0.016
                   *->leGqsVtLtCp.asgdpvp.nItWlk.gkplp...............
                      l G +VtLtC  +s ++ p +  W+k+++ l + + ++  + +++++
   mKIAA0806   164    LRGVNVTLTCTaVSSSDSPmSTIWRKdSEILYdvdienfvryrqqdg 210  

                   ....sgstLtiknvsleDsGlYtCvArNsvg<-*
                   +  ++ s L++ +v + D+G+Y+C+++N+ g   
   mKIAA0806   211 ealeYTSVLRLFSVNFTDEGKYQCIVTNHFG    241  

IG: domain 1 of 3, from 158 to 253: score 47.0, E = 2.5e-09
                   *->pp.vtvkeGesvtLtC.as.......titWy................
                      p+++ + +G +vtLtC+a ++++++ +  W++++    + +  +  +
   mKIAA0806   158    PEsTIALRGVNVTLTCtAVsssdspmSTIWRkdseilydvdienfvr 204  

                   ..............LtI.nvtpeDsesgGtYtCaat..sgsasseqgttL
                    +++++     ++ L++ +v + D+   G Y+C +t++ gs +s q ++L
   mKIAA0806   205 yrqqdgealeytsvLRLfSVNFTDE---GKYQCIVTnhFGSNYS-QKAKL 250  

                   tVl<-*
                   tV    
   mKIAA0806   251 TVN    253  

IGc2: domain 2 of 3, from 268 to 336: score 49.5, E = 4.4e-10
                   *->leGqsVtLtCpasgdpvpnItWlk..gkplp...........sgstL
                      + G  ++L+C a+g p+p+I+W k++g+  p  ++++ +  + +   
   mKIAA0806   268    RTGAMARLECAAEGHPTPQISWQKdgGTDFPaarerrmhvmpEDDVF 314  

                   tiknvsleDsGlYtCvArNsvg<-*
                    i nv+ eD G+Y+C A+N +g   
   mKIAA0806   315 FIANVKIEDMGIYSCMAQNIAG    336  

IG: domain 2 of 3, from 262 to 347: score 47.0, E = 2.5e-09
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p ++t + G  ++L+C a+++++++i+W ++++++ +  + ++ +  
   mKIAA0806   262    PMdLTIRTGAMARLECaAEghptpQISWQkdggtdfpaarerrmhvm 308  

                   .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   + ++ + I nv+ eD    G+Y C+a++ +g  s+  ++ LtVl   
   mKIAA0806   309 peddvFFIaNVKIEDM---GIYSCMAQniAGGLSA--NASLTVL    347  

IGc2: domain 3 of 3, from 362 to 427: score 52.1, E = 7.2e-11
                   *->leGqsVtLtCpasgdpvpnItWlk..gkplp........sgstLtik
                        G++++L+C+a g+p+p   W+k++g  l ++++     ++ L i 
   mKIAA0806   362    TRGETAVLQCIAGGSPAPRLNWTKddGPLLVterhffaaANQLLIIV 408  

                   nvsleDsGlYtCvArNsvg<-*
                   ++ leD+G+YtC+ +N  g   
   mKIAA0806   409 DAGLEDAGKYTCLMSNTLG    427  

IG: domain 3 of 3, from 356 to 438: score 45.8, E = 5.7e-09
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       ++ tv +Ge+++L+C a +++ +++ W++++++   + ++     +
   mKIAA0806   356    LEdKTVTRGETAVLQCiAGgspapRLNWTkddgpllvterhffaaan 402  

                   ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   + L+I ++ +eD+   G YtC  +++ g+  +   ++L V    
   mKIAA0806   403 qlLIIvDAGLEDA---GKYTCLMSntLGTERG--HIYLNVI    438  

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