hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj52037/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0806 ( 702 res) mfj52037 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- I-set Immunoglobulin I-set domain 198.5 1e-55 3 ig Immunoglobulin domain 98.9 9.8e-26 3 V-set Immunoglobulin V-set domain 52.1 1.2e-11 3 LRRCT Leucine rich repeat C-terminal domain 24.6 0.0023 1 C2-set_2 CD80-like C2-set immunoglobulin domain 13.4 0.024 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRRCT 1/1 122 147 .. 1 26 [] 24.6 0.0023 ig 1/3 166 236 .. 1 65 [] 27.2 0.00039 I-set 1/3 152 253 .. 1 97 [] 19.2 0.00034 V-set 1/3 151 253 .. 1 130 [] 18.4 0.0088 ig 2/3 270 331 .. 1 65 [] 33.3 5.5e-06 I-set 2/3 256 347 .. 1 97 [] 110.1 4.3e-29 V-set 2/3 256 347 .. 1 130 [] 23.9 0.0025 ig 3/3 364 422 .. 1 65 [] 38.4 1.7e-07 C2-set_2 1/1 351 431 .. 1 101 [] 13.4 0.024 I-set 3/3 350 438 .. 1 97 [] 69.2 9e-17 V-set 3/3 350 438 .. 1 130 [] 9.5 0.068 Alignments of top-scoring domains: LRRCT: domain 1 of 1, from 122 to 147: score 24.6, E = 0.0023 *->dlrCasPeslrGqplldlppsdfsCp<-* ++ Ca+Pe+l+Gq++l++ +df+C+ mKIAA0806 122 NVSCAHPEWLAGQSILNVDLKDFVCD 147 ig: domain 1 of 3, from 166 to 236: score 27.2, E = 0.00039 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G vtLtC++ ++++++ + W++++ l + + +++++ + mKIAA0806 166 GVNVTLTCTAVSSSDSPMSTIWRKDSEiLYdVDIENFVRYRQQDGEA 212 t....sLtitnvtpeDggtYtCvv<-* + +++L++ +v D+g Y C v mKIAA0806 213 LeytsVLRLFSVNFTDEGKYQCIV 236 I-set: domain 1 of 3, from 152 to 253: score 19.2, E = 0.00034 *->PkFtqkpkdveVqeGesarfeCkVtGt..PePtVsWfKd.....Gqp P++ ++p++ + G ++++C++ +++ + + W Kd++ + + mKIAA0806 152 PQIRTHPESTIALRGVNVTLTCTAVSSsdSPMSTIWRKDseilyDVD 198 lssvllpsdrfkvtydg...GsgtytLtIsnvqpdDsGkYtCvAtNsaGe + + ++++ +++ +t+ L+ v+ D+GkY C++tN +G+ mKIAA0806 199 IEN------FVRYRQQDgeaLEYTSVLRLFSVNFTDEGKYQCIVTNHFGS 242 .aeasaeLtVq<-* + + +a+LtV mKIAA0806 243 nYSQKAKLTVN 253 V-set: domain 1 of 3, from 151 to 253: score 18.4, E = 0.0088 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss ++ + +p+ s ++ +G +vtL+Ct sss+s mKIAA0806 151 KPQIRT-HPE----------STIALRGVNVTLTCTAV-----SSSDS 181 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn + s +W + + + y+ + e f r+r +++ mKIAA0806 182 PM-STIWRK-DSE------------ILYDVD------IENFV-RYR-QQD 209 ps..kgdfsLtIsnlqlsDsGtYyCa.........gggtrLtVl<-* + +++ L++ ++ D+G Y C +++ +++ + +LtV mKIAA0806 210 GEalEYTSVLRLFSVNFTDEGKYQCIvtnhfgsnySQKAKLTVN 253 ig: domain 2 of 3, from 270 to 331: score 33.3, E = 5.5e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk..lt.gvlvtssenngdsty G +++L C + +g+p ++++W+++g+++ + + + +++ d + mKIAA0806 270 GAMARLECAA--EGHPTPQISWQKDGGtdFPaARERRMHVMPEDDV- 313 qtsLtitnvtpeDggtYtCvv<-* + i nv+ eD g+Y+C++ mKIAA0806 314 ---FFIANVKIEDMGIYSCMA 331 I-set: domain 2 of 3, from 256 to 347: score 110.1, E = 4.3e-29 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvll P+F++ p d++++ G ar+eC ++G+P+P++sW Kd+G + ++ + mKIAA0806 256 PSFLKTPMDLTIRTGAMARLECAAEGHPTPQISWQKDgGTDFPA--A 300 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV +++r++v ++ ++I nv+++D+G+Y+C A+N aG +a a+LtV mKIAA0806 301 RERRMHVMPED----DVFFIANVKIEDMGIYSCMAQNIAGGLSANASLTV 346 q<-* mKIAA0806 347 L 347 V-set: domain 2 of 3, from 256 to 347: score 23.9, E = 0.0025 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss +s + + p +t +G++++L C ++ mKIAA0806 256 PSFLKT--PM----------DLTIRTGAMARLECAAE----GH---- 282 gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg t +++W +++++ + +e++ +v+++ + mKIAA0806 283 PTPQISWQKDgGTD-------------FPAARERRMHVMPEDDV------ 313 npskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* I n++ +D G+Y C + ++ LtVl mKIAA0806 314 --------FFIANVKIEDMGIYSCMaqniagglSANASLTVL 347 ig: domain 3 of 3, from 364 to 422: score 38.4, E = 1.7e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge++ L+C + +g+p ++++W++++++l +++ + n mKIAA0806 364 GETAVLQCIA--GGSPAPRLNWTKDDGpLLvTERHFFAAANQL---- 404 tsLtitnvtpeDggtYtCvv<-* L i ++ eD+g YtC mKIAA0806 405 --LIIVDAGLEDAGKYTCLM 422 C2-set_2: domain 1 of 1, from 351 to 431: score 13.4, E = 0.024 *->peIeppa.sllegeksenlevvatCvlpysagGkPapritWyldgke +I p ++ +++ + ++ v++C+ agG Papr+ W +d+++ mKIAA0806 351 SFIRPLEdKTVTRG----ETAVLQCI----AGGSPAPRLNWTKDDGP 389 lvpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsyga l +t+ + + ++l + + + ed g+ tC s+ + mKIAA0806 390 L-------LVTERHFFAAANQLLII-----VDAGLEDAGKY-TCLMSNTL 426 lrgsk<-* + ++ mKIAA0806 427 GTERG 431 I-set: domain 3 of 3, from 350 to 438: score 69.2, E = 9e-17 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+++++d +V+ Ge+a+++C + G+P P W+Kd+ pl + mKIAA0806 350 PSFIRPLEDKTVTRGETAVLQCIAGGSPAPRLNWTKDDGPLLV---- 392 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq ++r+ + + + + L+I ++ +D+GkYtC +N G+ ++ L+V mKIAA0806 393 TERHFFAAAN----QLLIIVDAGLEDAGKYTCLMSNTLGTERGHIYLNVI 438 <-* mKIAA0806 - - V-set: domain 3 of 3, from 350 to 438: score 9.5, E = 0.068 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss +s + + tv +G+++ L+C +++ mKIAA0806 350 PSFIRP--LE----------DKTVTRGETAVLQCIAG---GSP---- 377 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn ++ +++W + + +p l+ ++ ++n mKIAA0806 378 AP-RLNWTK----DDGPLLVT--------------------ERHFFAAAN 402 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* L I ++ l+D G Y+C +++ +++ g + L V mKIAA0806 403 QL-----LIIVDAGLEDAGKYTCLmsntlgteRGHIYLNVI 438 //