hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01412/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0804  ( 1406 res)   mbh01412

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RING     Ring finger                                     30.1    0.00031   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RING       1/1    1236  1287 ..     1    23 []    30.1  0.00031

Alignments of top-scoring domains:
RING: domain 1 of 1, from 1236 to 1287: score 30.1, E = 0.00031
                   *->CpICle...........pvvlpCgH.FCr.Ci...............
                      C+ICl++ +++++  ++++v  CgH ++  C+++++ + + ++++++
   mKIAA0804  1236    CSICLQqykrrqemadeIIVFSCGHlYHSfCLqskectlevegqtrw 1282 

                   .CPlC<-*
                    C  C   
   mKIAA0804  1283 aCHKC    1287 

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