hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05148/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0801  ( 1078 res)   mpm05148

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   175.4    5.4e-48   1
HELICc   helicase superfamily c-terminal domain         106.3    3.4e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1     442   642 ..     1   219 []   175.4  5.4e-48
HELICc     1/1     679   760 ..     1    86 []   106.3  3.4e-27

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 442 to 642: score 175.4, E = 5.4e-48
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      g++k++p+Q +aip++++grd+i++a+TGsGKT+afllp++++++ +
   mKIAA0801   442    GYeKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQ 488  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                   + l+  +g gp +++++PtreLa Q+ +e+kk+ + lg      l+vv++
   mKIAA0801   489 RSLE--EGEGPIAVIMTPTRELALQITKECKKFSKTLG------LRVVCV 530  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkg.....lsl.n
                   ygG+ +    eq+++lk+g+  i+v+Tpgr +d+l  ++g+++   +l  
   mKIAA0801   531 YGGtGI---SEQIAELKRGA-EIIVCTPGRMIDMLaANSGksrvfYYLfS 576  

                   ldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp.e
                   l l++lD   ++              + + ++   ++rq++++SAT+p++
   mKIAA0801   577 L-LFVLD---MIFV-------EADLRIVdNVR---PDRQTVMFSATFPrA 612  

                   ienllklflnlpelfpnpvfisvgf...tlepieqf<-*
                   +e l++++l+      +p+++ vg ++ ++ ++eq    
   mKIAA0801   613 MEALARRILS------KPIEVQVGGrsvVCSDVEQQ    642  

HELICc: domain 1 of 1, from 679 to 760: score 106.3, E = 3.4e-27
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      d l + L ++     +++++lHGg++q +R+ i+++F++g +k Lva
   mKIAA0801   679    DGLLKDLMRA----SYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVA 721  

                   TdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   T+va+rGlD++++ lV+ny++p  +++y++R+GR+GRaG   
   mKIAA0801   722 TSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAG    760  

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