hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm05148/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0801 ( 1078 res) mpm05148 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DEAD DEAD/DEAH box helicase 176.7 3.9e-49 1 Helicase_C Helicase conserved C-terminal domain 112.7 6.8e-30 1 ResIII Type III restriction enzyme, res subunit -33.0 0.18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ResIII 1/1 444 611 .. 1 244 [] -33.0 0.18 DEAD 1/1 446 616 .. 1 266 [] 176.7 3.9e-49 Helicase_C 1/1 684 760 .. 1 76 [] 112.7 6.8e-30 Alignments of top-scoring domains: ResIII: domain 1 of 1, from 444 to 611: score -33.0, E = 0.18 *->iklRpyQeeAierllesiekgelrlatglkdkdkkkrglivmA.TGs k+ p Q +Ai ++ r li A+TGs mKIAA0801 444 EKPTPIQTQAIPAIM-------------------SGRDLIGIAkTGS 471 GKTltaa.....kiliarllkkqqklkhg.riddskvLFlVprkdLleQa GKT+ + + ++ +++++ + +++++ +++ p+++L+ Q mKIAA0801 472 GKTIAFLlpmfrH-IMDQRSLE----EGEgP----IAVIMTPTRELALQI 512 leeFtkfeskkkkef.knpg..vdkklkvltdnqkdsalegkskkndiei +++kk+++ + + v+ + +++ +q + + +ei mKIAA0801 513 T-------KECKKFSkTLGLrvVCVYGGTGISEQIAELK------RGAEI 549 ifttiQkLskalklgkendeeekskstesvvglrlavesleflldefdli i+ t ++ ++l+ +++++ ++ f+l l+ mKIAA0801 550 IVCTPGRMI--DMLAANSGKSRV--------------FYYLFSL----LF 579 IiDEaHrssaktksakededatklevyrkilekwelelnkkyfkpafl.L + D ++ + +i + + +p +++ mKIAA0801 580 VLD----MIFVEA-------------DLRIVD---------NVRPDRQtV 603 GlTATPer<-* ++AT++r mKIAA0801 604 MFSATFPR 611 DEAD: domain 1 of 1, from 446 to 616: score 176.7, E = 3.9e-49 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ptpiQaeaipaileneGfalredvlssggmdrlvlqApTGSGKTlaf ptpiQ +aipai+ +G r d++ + +A+TGSGKT af mKIAA0801 446 PTPIQTQAIPAIM--SG---R-DLI--------G-IAKTGSGKTIAF 477 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx llPilygqrllkgpksarggksqgggknergfkidspqalvlaPTreLae llP++ ++++++ +g++ p a++++PTreLa+ mKIAA0801 478 LLPMF--RHIMDQRSLEEGEG---------------PIAVIMTPTRELAL 510 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx QiyeelkkllkilalsplgvnellrrigtglrvavlslyGGsslkdqldk Qi +e+kk++k ++glrv+++ yGG+ +++q+++ mKIAA0801 511 QITKECKKFSK----------------TLGLRVVCV--YGGTGISEQIAE 542 RF x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x xxxxxxx xx l.rgkreskggpdIvvgTPgrLldllrngrinikiev.s.sertgkl.kl l+r g+ I+v+TPgr +d+l + ++++ + + +l mKIAA0801 543 LkR-------GAEIIVCTPGRMIDML----------AaNsGKS-RVFyYL 574 RF xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxx knlkhlkllVlD....EahrlldmghgFgedleeilrrlprn.eplraql +l l+VlD Ea++ + n +p+r mKIAA0801 575 FSL----LFVLDmifvEADLRIVD-----------------NvRPDR--- 600 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx lgtilHqkpniQtllfSATlpprevedl<-* Qt++fSAT+ pr e l mKIAA0801 601 -----------QTVMFSATF-PRAMEAL 616 Helicase_C: domain 1 of 1, from 684 to 760: score 112.7, E = 6.8e-30 *->ll.epgikvarlhGglsqeeReeilekFrsgkskvLvaTdvaarGlD l + +++ +lhGg++q +R+ i+++F++g++k+LvaT+vaarGlD mKIAA0801 684 DLmRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 730 ipdvnlVInydlpwnpesyiQRiGRaGRaG<-* ++++ lV+ny +p +e+y++R+GR+GRaG mKIAA0801 731 VKHLILVVNYSCPNHYEDYVHRAGRTGRAG 760 //