hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04147/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0799  ( 1450 res)   mbg04147

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
B41      Band 4.1 homologues                            162.9    3.1e-44   1
MyTH4    Domain in Myosin and Kinesin Tails             138.0    9.9e-37   1
PH       Pleckstrin homology domain.                    135.8    4.6e-36   2
IQ       Short calmodulin-binding motif containing co    53.6    2.5e-11   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IQ         1/3     129   151 ..     1    23 []    26.7   0.0033
IQ         2/3     152   174 ..     1    23 []    16.9      2.8
IQ         3/3     175   197 ..     1    23 []    20.8     0.19
PH         1/2     605   704 ..     1    82 []    87.4  1.7e-21
PH         2/2     785   891 ..     1    82 []    51.9  8.2e-11
MyTH4      1/1     939  1087 ..     1   166 []   138.0  9.9e-37
B41        1/1    1088  1350 ..     1   232 []   162.9  3.1e-44

Alignments of top-scoring domains:
IQ: domain 1 of 3, from 129 to 151: score 26.7, E = 0.0033
                   *->rleraAiiIQaawRGylaRkryk<-*
                      ++ raA++I a++ GylaRk+y+   
   mKIAA0799   129    EIDRAAMVIRAHILGYLARKQYR    151  

IQ: domain 2 of 3, from 152 to 174: score 16.9, E = 2.8
                   *->rleraAiiIQaawRGylaRkryk<-*
                      ++   ++ IQ+ +R +laRk++    
   mKIAA0799   152    KVLCGVVTIQKNYRAFLARKKFL    174  

IQ: domain 3 of 3, from 175 to 197: score 20.8, E = 0.19
                   *->rleraAiiIQaawRGylaRkryk<-*
                       l++aAi++Q+  RG laR+ y+   
   mKIAA0799   175    HLKKAAIVFQKQLRGQLARRVYR    197  

PH: domain 1 of 2, from 605 to 704: score 87.4, E = 1.7e-21
                   *->vikeGwLlkks.......k.swkkryfvLfngvLlyyksk...kpkg
                       +k+GwL+kk++++++ ++++wkkr+fvL+ + L+y+++++++k+kg
   mKIAA0799   605    ALKQGWLHKKGggsstlsRrNWKKRWFVLRQSKLMYFENDseeKLKG 651  

                   sipLsgc.svre.p....cFeivt.drtlllqAeseeereeWvealqsai
                   ++ +++++++ +++++++++ i+  drt++l Aes+e++ +W++ l ++ 
   mKIAA0799   652 TVEVRTAkEIIDnTskenGIDIILaDRTFHLIAESPEDASQWFSVLSQVH 701  

                   aka<-*
                   ++    
   mKIAA0799   702 SST    704  

PH: domain 2 of 2, from 785 to 891: score 51.9, E = 8.2e-11
                   *->vikeGwLlkks.......k.swkkryfvLfngvLlyyksk....kpk
                      +i +GwL+k  +++++ ++ + kkr+fvL+ ++L yyks++++  + 
   mKIAA0799   785    FIVRGWLHKEVknspkmsSlKLKKRWFVLTHNSLDYYKSSeknaLKL 831  

                   gsipLsgc.svre.p........cFeivt.dr..tlllqAeseeereeWv
                   g++ L+++ sv++++++  ++ +++ ++  +r++++ l+++   e+++W 
   mKIAA0799   832 GTLVLNSLcSVVPpDekifketgYWNVTVyGRkhCYRLYTKLLNEATRWS 881  

                   ealqsaiaka<-*
                   +a+q++++     
   mKIAA0799   882 SAIQNVTDTK    891  

MyTH4: domain 1 of 1, from 939 to 1087: score 138.0, E = 9.9e-37
                   *->fskkPiktsLLkleddk.eedskeAvkiFkaILkfMGDlPlpkssss
                       ++ +i+ +LLk++++++++d+++++++ +++L+ M+D P+p     
   mKIAA0799   939    LPYGDINLNLLKDKGYTtLQDEAIKIFNSLQQLESMSD-PIP----- 979  

                   klytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQl
                                          ++q Ilq+g++ ++LRDE+YCQliKQ+
   mKIAA0799   980 -----------------------IIQGILQTGHDLRPLRDELYCQLIKQT 1006 

                   tk..........RGWeLLylctglFpPSeSrllkyLlqFLkrradqptet
                   +k +++++ ++ + W++L++++++F+PS+ ++lkyL+++Lkr ++q+++t
   mKIAA0799  1007 NKvphpgsvgnlYSWQILTCLSCTFLPSR-GILKYLKFHLKRIREQFPGT 1055 

                   pqlmaqglakycle.....GaRkqpPsrlEleAik<-*
                   +    +++a + +e+ +++++R+++Psr E+eA+    
   mKIAA0799  1056 E---MEKYALFIYEslkktKCREFVPSRDEIEALI    1087 

B41: domain 1 of 1, from 1088 to 1350: score 162.9, E = 3.1e-44
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      ++++++  Vy++ g++++++++s+tta e++e++ r l +   ++++
   mKIAA0799  1088    HRQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAM-EDSRNM 1133 

                   FgLqfedkded.............shWldpaktilkqdvkspksepltly
                   F+L++++  +d+  ++++   +   +++++a+t   +d        +++y
   mKIAA0799  1134 FALFEYNGQVDkaiesrtivadvlAKFEKLAATSEAGDAP------WKFY 1177 

                   FRvkFyppdwhgppeqlkeDptrynllylQvrddilsGrlpcpseeeall
                   F+  ++ ++    ++++k+   +  ++++Q+++ +++G++p p ee +  
   mKIAA0799  1178 FKLYCFLDT----DSMPKDSVEFA-FMFEQAHEAVIHGHHPAP-EESLQV 1221 

                   LAaLalqaefGdydpeeeek..............................
                   LAaL lq + Gdy p++++++ ++  + ++ + + ++++++ ++ ++ ++
   mKIAA0799  1222 LAALRLQYLQGDYTPHTSIPpleevysvqrlrarisqstktftpyerlek 1271 

                   ............kkslkhvakelslkrflPkqlldsikasflqiqltlke
                   ++++  +++ ++++++ +v+  + +++ + + ++++++ s          
   mKIAA0799  1272 rrtsflegtlrrSFRTGSVVRQKAEEEQMLDMWIKEEVCS---------- 1311 

                   wrerIvelhkehaglspeeaklkYLelarrLpptYGvelF<-*
                    r  I +++k++ g+++e+a+ kY++l++ +p +YG++lF   
   mKIAA0799  1312 ARTSIIDKWKKLQGMNQEQAMAKYMALIKEWP-GYGSTLF    1350 

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