hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg04147/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0799  ( 1450 res)   mbg04147

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MyTH4    MyTH4 domain                                   198.4    1.1e-55   1
PH       PH domain                                      135.5    9.5e-37   2
IQ       IQ calmodulin-binding motif                     60.1    4.9e-14   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IQ         1/3     131   151 ..     1    21 []    21.1    0.026
IQ         2/3     154   174 ..     1    21 []    23.8    0.004
IQ         3/3     177   197 ..     1    21 []    25.9  0.00092
PH         1/2     605   702 ..     1    92 []    94.9  1.6e-24
PH         2/2     785   889 ..     1    92 []    45.0  1.7e-09
MyTH4      1/1     975  1087 ..     1   118 []   198.4  1.1e-55

Alignments of top-scoring domains:
IQ: domain 1 of 3, from 131 to 151: score 21.1, E = 0.026
                   *->rraaikIQaawRGylaRkryk<-*
                       raa++I a++ GylaRk+y+   
   mKIAA0799   131    DRAAMVIRAHILGYLARKQYR    151  

IQ: domain 2 of 3, from 154 to 174: score 23.8, E = 0.004
                   *->rraaikIQaawRGylaRkryk<-*
                         +++IQ+ +R++laRk++    
   mKIAA0799   154    LCGVVTIQKNYRAFLARKKFL    174  

IQ: domain 3 of 3, from 177 to 197: score 25.9, E = 0.00092
                   *->rraaikIQaawRGylaRkryk<-*
                      ++aai++Q++ RG laR+ y+   
   mKIAA0799   177    KKAAIVFQKQLRGQLARRVYR    197  

PH: domain 1 of 2, from 605 to 702: score 94.9, E = 1.6e-24
                   *->vikeGwLlkkg......gkkswkkRyfvLfndvLlyykdkk.kkpkg
                        k+GwL+kkg+++++ ++++wkkR+fvL+++ L+y+++++++k+kg
   mKIAA0799   605    ALKQGWLHKKGggsstlSRRNWKKRWFVLRQSKLMYFENDSeEKLKG 651  

                   sipLsgi.qvekvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiq
                   ++ +++++++ + ++  ++n++ i+  dr t++l aes+e++ +W++ ++
   mKIAA0799   652 TVEVRTAkEIIDNTS--KENGIDIILaDR-TFHLIAESPEDASQWFSVLS 698  

                   sair<-*
                   ++++   
   mKIAA0799   699 QVHS    702  

PH: domain 2 of 2, from 785 to 889: score 45.0, E = 1.7e-09
                   *->vikeGwLlkkg......gkkswkkRyfvLfndvLlyykdkk..kkpk
                       i +GwL+k  +++++ +  + kkR+fvL+ ++L yyk++ +++ + 
   mKIAA0799   785    FIVRGWLHKEVknspkmSSLKLKKRWFVLTHNSLDYYKSSEknALKL 831  

                   gsipLsgi.qvekvpdn..krkncFeirt.dr.etlllqaeseeerkeWv
                   g++ L+++ +v+++++   k+  ++ ++  +r+ ++ l+++   e+++W 
   mKIAA0799   832 GTLVLNSLcSVVPPDEKifKETGYWNVTVyGRkHCYRLYTKLLNEATRWS 881  

                   kaiqsair<-*
                   +aiq++     
   mKIAA0799   882 SAIQNVTD    889  

MyTH4: domain 1 of 1, from 975 to 1087: score 198.4, E = 1.1e-55
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                      +++i+++q+Il++g++ ++LRDE+YCQ+iKQ++k+P+++++++l +W
   mKIAA0799   975    SDPIPIIQGILQTGHDLRPLRDELYCQLIKQTNKVPHPGSVGNLYSW 1021 

                   eLlylctgtFpPSeellkyLsEqFlhrraheqlsgpelegyaadcqerLk
                   ++l+++++tF+PS+++lkyL+  F+ +r++eq++g+e+e+ya++++e+Lk
   mKIAA0799  1022 QILTCLSCTFLPSRGILKYLK--FHLKRIREQFPGTEMEKYALFIYESLK 1069 

                   ktqknGsRkypPsrlEieAik<-*
                   kt++   R+++Psr+EieA++   
   mKIAA0799  1070 KTKC---REFVPSRDEIEALI    1087 

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