hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj41092/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0795 ( 588 res) mfj41092 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 357.5 1.4e-103 6 BACK BTB And C-terminal Kelch 190.5 2.6e-53 1 Kelch_2 Kelch motif 171.7 1.2e-47 6 BTB BTB/POZ domain 146.6 4.4e-40 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 42 149 .. 1 135 [] 146.6 4.4e-40 BACK 1/1 154 256 .. 1 103 [] 190.5 2.6e-53 Kelch_1 1/6 291 337 .. 1 45 [] 46.6 5.5e-10 Kelch_2 1/6 290 337 .. 1 54 [] 24.4 0.0027 Kelch_1 2/6 339 384 .. 1 45 [] 76.6 5.2e-19 Kelch_2 2/6 339 384 .. 1 54 [] 37.1 4e-07 Kelch_1 3/6 386 431 .. 1 45 [] 71.6 1.7e-17 Kelch_2 3/6 386 431 .. 1 54 [] 41.0 2.7e-08 Kelch_1 4/6 433 478 .. 1 45 [] 57.7 2.4e-13 Kelch_2 4/6 433 478 .. 1 54 [] 19.0 0.12 Kelch_1 5/6 480 525 .. 1 45 [] 50.4 4.1e-11 Kelch_2 5/6 480 525 .. 1 54 [] 16.5 0.62 Kelch_1 6/6 527 572 .. 1 45 [] 68.9 1e-16 Kelch_2 6/6 527 572 .. 1 54 [] 40.3 4.5e-08 Alignments of top-scoring domains: BTB: domain 1 of 1, from 42 to 149: score 146.6, E = 4.4e-40 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ++e r+qg+lcDVtL++gd +kf AH+ vLaa+ pYF+a+ mKIAA0795 42 MEEIRRQGKLCDVTLKIGD--------HKFSAHRIVLAASIPYFHAM 80 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft++ ++e++++ ei +++++p+++eal++f+Y g l i+ mKIAA0795 81 FTND----MMECKQD---EIVMQGMDPSALEALINFAYNGNLAID----- 118 PssckseenvedlLalAadllqipslvdkCeefliksl<-* +nv++lL A ++lq++s++d+C+ fl + l mKIAA0795 119 ------QQNVQSLLMGA-SFLQLQSIKDACCTFLRERL 149 BACK: domain 1 of 1, from 154 to 256: score 190.5, E = 2.6e-53 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLg+r+fA+++ c L++aA++fi+q+F+eV+ seEFl L++e+++e mKIAA0795 154 CLGVRQFAETMMCAVLYDAANSFIHQHFVEVSLSEEFLALPLEDVLE 200 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky l+s+DeLnV+sEe+VfeA+++Wv++d e+R ++lpeLLs++RLpL+ p++ mKIAA0795 201 LVSRDELNVKSEEQVFEAALAWVRYDREQRGPCLPELLSNIRLPLCRPQF 250 Llevve<-* L ++v+ mKIAA0795 251 LSDRVQ 256 Kelch_1: domain 1 of 6, from 291 to 337: score 46.6, E = 5.5e-10 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp + + +++++ g+iY++GG ++ + sln vev+Dp n+W+k+ +m+ mKIAA0795 291 RTRPRCCTSIAGLIYAVGGLNSagDSLNVVEVFDPIANRWEKCHPMT 337 <-* mKIAA0795 - - Kelch_2: domain 1 of 6, from 290 to 337: score 24.4, E = 0.0027 *->pryphasv.vpggklyvvGGsfkgnrgtgngdesssdllvldpetnv +r + +++++ g +y vGG ++s++++ v+dp n+ mKIAA0795 290 FRTRPRCCtSIAGLIYAVGGL-------NSAGDSLNVVEVFDPIANR 329 Weklpalp<-* Wek+ ++ mKIAA0795 330 WEKCHPMT 337 Kelch_1: domain 2 of 6, from 339 to 384: score 76.6, E = 5.2e-19 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rs++gv+v++g++Y+iGGydg+ +l++ve+Y+pet+tWt++ sm+ mKIAA0795 339 ARSRVGVAVVNGLLYAIGGYDGqLRLSTVEAYNPETDTWTRVGSMN 384 -* mKIAA0795 - - Kelch_2: domain 2 of 6, from 339 to 384: score 37.1, E = 4e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r+++ ++v++g ly +GG+ +g +++s++ ++pet +W mKIAA0795 339 ARSRVGVAVVNGLLYAIGGY--------DGQLRLSTVEAYNPETDTW 377 eklpalp<-* +++ ++ mKIAA0795 378 TRVGSMN 384 Kelch_1: domain 3 of 6, from 386 to 431: score 71.6, E = 1.7e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rs +g vvldg+iYv+GGydg++slnsve Y+pet++Wt +++m+ mKIAA0795 386 KRSAMGTVVLDGQIYVCGGYDGnSSLNSVETYSPETDKWTVVTPMS 431 -* mKIAA0795 - - Kelch_2: domain 3 of 6, from 386 to 431: score 41.0, E = 2.7e-08 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r+ + +vv++g++yv+GG+ +g++s++++ + pet +W mKIAA0795 386 KRSAMGTVVLDGQIYVCGGY--------DGNSSLNSVETYSPETDKW 424 eklpalp<-* + ++++ mKIAA0795 425 TVVTPMS 431 Kelch_1: domain 4 of 6, from 433 to 478: score 57.7, E = 2.4e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< Rs agv+v++g+iYv GG+dg q+++sve Y++ t tW++ +sm mKIAA0795 433 NRSAAGVTVFEGRIYVSGGHDGlQIFSSVEHYNHHTATWHPAASML 478 -* mKIAA0795 - - Kelch_2: domain 4 of 6, from 433 to 478: score 19.0, E = 0.12 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+ ++v +g++yv+GG+ +g +s++ ++ t +W mKIAA0795 433 NRSAAGVTVFEGRIYVSGGH--------DGLQIFSSVEHYNHHTATW 471 eklpalp<-* ++ +++ mKIAA0795 472 HPAASML 478 Kelch_1: domain 5 of 6, from 480 to 525: score 50.4, E = 4.1e-11 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+++g+++l+ k++v+GGydg+ +l+ +e+Y+ + ++W+ + +m mKIAA0795 480 KRCRHGAASLGSKMFVCGGYDGsGFLSIAEMYSSVADQWCLIVPMH 525 -* mKIAA0795 - - Kelch_2: domain 5 of 6, from 480 to 525: score 16.5, E = 0.62 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++h ++++g+k++v+GG+ +g+ ++s + +W mKIAA0795 480 KRCRHGAASLGSKMFVCGGY--------DGSGFLSIAEMYSSVADQW 518 eklpalp<-* + + +++ mKIAA0795 519 CLIVPMH 525 Kelch_1: domain 6 of 6, from 527 to 572: score 68.9, E = 1e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rs+++ v+ g++Y++GGydg++ l+sve+YDpet++Wt++++m mKIAA0795 527 RRSRVSLVASCGRLYAVGGYDGqSNLSSVEMYDPETDRWTFMAPMA 572 -* mKIAA0795 - - Kelch_2: domain 6 of 6, from 527 to 572: score 40.3, E = 4.5e-08 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++++v ++g+ly vGG+ +g + +s++ +dpet +W mKIAA0795 527 RRSRVSLVASCGRLYAVGGY--------DGQSNLSSVEMYDPETDRW 565 eklpalp<-* + ++++ mKIAA0795 566 TFMAPMA 572 //