hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph02383/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0794  ( 367 res)   mph02383

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UBX      Domain present in ubiquitin-regulatory prote    66.7    2.9e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UBX        1/1     283   365 ..     1    97 []    66.7  2.9e-15

Alignments of top-scoring domains:
UBX: domain 1 of 1, from 283 to 365: score 66.7, E = 2.9e-15
                   *->pkknpsisqcrlQiRlpdGsrlvrkFpssetLeevyefVeLqkseal
                      +  + + +++ l +R+pdG+r++++ p +++L +++++V     +++
   mKIAA0794   283    GIDVNG-PKAQLMLRYPDGKREQITLPEQAKLLALVKHV-----QSK 323  

                   tdgndpaevynadFtLnspfPRrtftkdDelKklleldellPsssLlLep
                   +++n +       F+L+++fPRr ++ +D+  +l+e+ +l P++++++++
   mKIAA0794   324 GYPNER-------FELLTNFPRRKLSHLDYDITLQEA-GLCPQETVFVQE 365  

                   <-*
                      
   mKIAA0794     -     -    

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