hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02383/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0794  ( 367 res)   mph02383

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UBX      UBX domain                                     111.5    1.7e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UBX        1/1     285   365 ..     1    90 []   111.5  1.7e-29

Alignments of top-scoring domains:
UBX: domain 1 of 1, from 285 to 365: score 111.5, E = 1.7e-29
                   *->ekaedvcrlqiRlPDGsRlvrrFnssdtlqdvydfvdshrygadepe
                      ++++++++l++R+PDG+R++++ + +++l +++++v+s++y+++   
   mKIAA0794   285    DVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNER-- 329  

                   dYkheFeFsLltpfPrrlltkldesktLkeagllpnstlvlep<-*
                          F+Llt+fPrr l++ld++ tL+eagl+p++t+++++   
   mKIAA0794   330 -------FELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE    365  

//