hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid01072/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0792  ( 820 res)   mid01072

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF221   Domain of unknown function DUF221              612.7   2.2e-180   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF221     1/1     350   784 ..     1   501 []   612.7 2.2e-180

Alignments of top-scoring domains:
DUF221: domain 1 of 1, from 350 to 784: score 612.7, E = 2.2e-180
                   *->iqalreslysgtpiivpaaFVtFQEkSratYiLKDFNACKCQ.Aqva
                      i+ ++es ++++p  +++aFVtF EkS+atYiLKDFNACKCQ++ ++
   mKIAA0792   350    IT-AEESRVQDQP--LGMAFVTFREKSMATYILKDFNACKCQgLRCK 393  

                   aqtqpssqqtrkpt.qwlkvelApePeDivWdNLrlsyPvrrlfrrlian
                   +++qpss ++++ +++w+ v++A  PeDi+W+NL++++ vr+++++l++n
   mKIAA0792   394 GEPQPSSYSRELCVsKWT-VTFASYPEDICWKNLSIQG-VRWWLQWLGIN 441  

                   vafilliifwifPVAfVgilsNletLskkfPfLKfilndpkflnsiitGl
                   + ++ +++f+++P       s++ ++++kf+++K+i+++   +n++i+++
   mKIAA0792   442 FSLFVVLFFLTTP-------SIIMSTMDKFNVTKPIHAL---NNPVISQF 481  

                   LPtvaLslflsivPpimrylSklqGlvSkSeeErsaqnkyyiFlvvnvFL
                   +Pt++L++f++++P+i++y+++l++++++S+e+r++++k+yiFl+   F+
   mKIAA0792   482 FPTLLLWSFSALLPSIVYYSTLLESHWTRSGENRIMVSKVYIFLI---FM 528  

                   VvtlsgsGLT.LDassqvesllnestksipalLAnslPkqfdtvglsvss
                   V++l+++GLT+LD+++++ +++++s++si+ l++++lP+q          
   mKIAA0792   529 VLILPSLGLTsLDFFFRWLFDKTSSETSIR-LECVFLPDQ---------- 567  

                   fvqfanFFisYiilsGlagfggeLLqlvpLilslvlkkflktAAtprkKW
                       ++FF++Y+i+s+++g+g+eLL+l++Lil++++++++ktAA++r   
   mKIAA0792   568 ----GAFFVNYVIASAFIGSGMELLRLPGLILYTFRMIMAKTAADRR--- 610  

                   dRleetapfqygfgivlPrilllflIgicYSiisPlILpFglVyFiLgYl
                    +++++++f y+fg++++++l++f+++ +YSi++P+I pFgl+y++L+++
   mKIAA0792   611 -NVKQNQAFEYEFGAMYAWMLCVFTVIMAYSITCPIIVPFGLIYILLKHM 659  

                   vYkYqLiyVynhsNYyeskGkyWPralnriivGPiLvLsqlcLlGLfglk
                   v++++L+++y ++  + +k +++ +a+n+++++PiL+L++l ++++++l+
   mKIAA0792   660 VDRHNLYFAYLPA--KLEKRIHF-AAVNQALAAPILCLFWLFFFSFLRLG 706  

                   kgwvasvltipllvlTiLvlfhiyckkrflPlskyiPlseirekdeeeek
                    +++a+++t+++ +lTiL ++ ++c+++f++ls   P ++++e++   ++
   mKIAA0792   707 LTAPATLFTFLVVLLTILACLLYTCFGCFKHLS---PWNYKTEES---AS 750  

                   dssseesknLnlsaiksnafeckeesekagakidlksiyalPrfksease
                   d++se+      +a+ +++f+                 +++Pr+ +++++
   mKIAA0792   751 DKGSEA------EAHVPPPFT-----------------PYVPRILNGLAS 777  

                   eleslsg<-*
                   e+++ls+   
   mKIAA0792   778 ERTALSP    784  

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