hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00383/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0791  ( 1423 res)   mpf00383

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Nucleoporin Non-repetitive/WGA-negative nucleoporin    3071.9          0   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Nucleoporin   1/1      44  1416 ..     1  1509 []  3071.9        0

Alignments of top-scoring domains:
Nucleoporin: domain 1 of 1, from 44 to 1416: score 3071.9, E = 0
                   *->ktSgla.lsepLelAgklidrllqkDRNtPvLdEltyvSkhnraTvS
                      +tS+ a+l+e+Le+Ag+lidr+lq+DR++P+L+El++vS++n++TvS
   mKIAA0791    44    STSAAAsLQEALENAGRLIDRQLQEDRMYPDLSELLMVSAPNSPTVS 90   

                   GlddndyqekggLgaDfTPflkQivTnrkSAIPdEiSWLeefstikvkad
                   G++d+dy+++g++++ ++P+l++i+T+r+   P E+   e+f + ++ ++
   mKIAA0791    91 GMSDMDYPLQGPGLL-SVPSLPEISTIRRVPLPPEL--VEQFGHMQCNCM 137  

                   MGiFPElnRaWlTIDsklilWNiNntrdyayvDglsHTIlkVgLVKPKPg
                   MG+FP+++RaWlTIDs++++WN+++++d+ay+Dgls+TIl+VgLVKPK+g
   mKIAA0791   138 MGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGLVKPKAG 187  

                   tFVpdVkhLLvlaTpvdiviLgiSfdestYnElqifNRtslvvgvqgldD
                   +F+p+V+hLLvlaTpvdiviLg+S+++++ ++++i+N +s+++g q+l+D
   mKIAA0791   188 IFQPHVRHLLVLATPVDIVILGLSYANVQ-TGSGILN-DSMCGGMQLLPD 235  

                   PLYSLPtDNtvsvIisserdGRIFlaGkdgGlclyElaYqaeedWFnsrC
                   PLYSLPtDNt++++i+s+++GRIFlaGkdg  clyE+aYqae++WF++rC
   mKIAA0791   236 PLYSLPTDNTYLLTITSTDNGRIFLAGKDG--CLYEVAYQAEAGWFSQRC 283  

                   kKInLsKSsLsyLvPslLkvtipgvdlIQkllEDnsnGdaGfeddpIeQl
                   +KIn+sKSsLs+LvPslL++t+++                   ddpI+Q+
   mKIAA0791   284 RKINHSKSSLSFLVPSLLQFTFSE-------------------DDPIVQI 314  

                   EIDnSRgiLYtLSeKgvIraYdItedgLeGpvriesasqnrIvnaagska
                   EIDnSR+iLYt+SeKgvI++Yd+++dg +G++r++s+sqn+Iv aag++a
   mKIAA0791   315 EIDNSRNILYTRSEKGVIQVYDLGHDG-QGMSRVASVSQNAIVSAAGNIA 363  

                   atidrsvfkkIvkIasisaeEnndLfLvAvTqaGVRLYFstsSLNVKqqF
                   +tidrsvfk+Iv+Ia+i+ +E++d++L+AvT+aGVRLYFst+        
   mKIAA0791   364 RTIDRSVFKPIVQIAVIESSESLDCQLLAVTHAGVRLYFSTC-------- 405  

                   GPAVPCSPGENtGFGqPAVqPplRqniealktLkLehVrlPPgsvasatv
                                        p+Rq++++++tL+L+hVrlPPg++as+tv
   mKIAA0791   406 ---------------------PFRQPLARPNTLTLVHVRLPPGFSASSTV 434  

                   ekELpkqvhealyssgillmtaleqhdqdlLwsqkkssvvleTtlaeTii
                   ek  p++vh+alys+gillmta+e++d+d+Lw++++++++++++++eT++
   mKIAA0791   435 EK--PSKVHKALYSKGILLMTASENEDNDILWCVNHDTFPFQKPMMETQM 482  

                   spgidgvsvalsavdelkvdKkEnssvigitnKallesaeepPvtLvhkl
                   ++++dg+s+alsa+delkvdK     +i+++nK++++++++p    v+++
   mKIAA0791   483 TTRVDGHSWALSAIDELKVDK-----IITPLNKDHIPITDSP----VVVQ 523  

                   yvsvPdykilllsgkgvenielLktvDelrqIlpssngfnaeevpqfFan
                   ++++P++k++lls++g++++++L++vD+lr++l+s++g+++ee+++fF++
   mKIAA0791   524 QHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFFKL 573  

                   efadQacataLklAvsTsaaleivaywapdafFeyggEPCYnplpFvaay
                   +++dQacat+L+lA+sT+a++++v++wa++afF+yggE   ++++F+a++
   mKIAA0791   574 HQEDQACATCLILACSTAACDREVSAWATRAFFRYGGE---AQMRFPATL 620  

                   gtaeAcsTaLfvtcksnkseklkSsalaplSlGiPgVgeikPkfsrpsss
                   +t+++++++L+++++s+++++ +S++++p+SlG+P++g+++P++s+p+  
   mKIAA0791   621 PTPSNVGPILGSPMYSSSPVPSGSPYPNPSSLGTPSHGAQPPTMSTPMC- 669  

                   tvssLLSkPvgntAttnLmQalqafskSgPAnkEDleldeIVlSpkfyGi
                           +vg+       +a+qa+s Sg      l+++eIV+S+k++Gi
   mKIAA0791   670 --------AVGS-------PAMQAASMSG------LTGPEIVYSGKHNGI 698  

                   alyisRllsdIWdarvvvertDnRvtsHvFkSssdPitPsikeekadelS
                   ++y+sR++++IWda++vver        vFkSs+       +e++a+e+S
   mKIAA0791   699 CIYFSRIMGNIWDASLVVER--------VFKSSN-------REITAIESS 733  

                   dlRslrskvsievdlvEyyLSsikVvLdeFldRtssySiislgnPlllak
                             ++v+l+E++L+++k +L+eFldR+s++S+++lgnP+++a 
   mKIAA0791   734 ----------VPVQLLESVLQELK-GLQEFLDRNSQFSGGPLGNPNTTAR 772  

                   eqnrllivvlsEqAntaEsialnAlillvksikEklSLlNilyeerkSYq
                   +q+rl++ +++E++nt+++++++++++ +++++Ek+SL++i++++rkSYq
   mKIAA0791   773 VQQRLVGFMRPENGNTQQMQQELQRKFQEAQLSEKISLQAIQQLVRKSYQ 822  

                   ALveafkllehsFkvIvgelskevQkqLvkltFkDLfipndKTKevikel
                   AL+++++l+eh+F vIvgel+ke+Q+qL+++tFkDL+i+    Kev+++l
   mKIAA0791   823 ALALWKLLCEHQFSVIVGELQKEFQEQLKITTFKDLVIRD---KEVTGAL 869  

                   liSlINlyIkdgAsvdyiskaLqErCpslysaeDivcykAtElLerAkev
                   ++SlIN+yI+d+A+vd+is++Lq++Cp+lys++D+vc+kA+ElL+r+++v
   mKIAA0791   870 IASLINCYIRDNAAVDGISLHLQDTCPLLYSTDDAVCSKANELLQRSRQV 919  

                   eliskkekermLrtalklyekiaedlelvdLksvvaqmisvnfyegvvEl
                   +  sk+e+ermLr++lk+y+ki++   +vdL+sv+aq+++v+fyegvvEl
   mKIAA0791   920 Q--SKTERERMLRESLKEYQKISN---QVDLPSVCAQYRQVRFYEGVVEL 964  

                   sLtiAeKkDkgelglhfyknGepeeDrrGkqtfdkRinvYklvfdtLkev
                   sLt+AeKkD+++lglhfyk+GepeeD++G+qtf++R+n+Yk+++dtL+e+
   mKIAA0791   965 SLTAAEKKDPQGLGLHFYKHGEPEEDVVGLQTFQERLNSYKCITDTLQEL 1014 

                   derskaktHVQSpSinnkkGPPVLSsdkiSisneeAtklkekvyklalks
                   +++ska++  QSpS+++k+GPPVLSsd++++sneeA++++e+++kla++s
   mKIAA0791  1015 VNQSKAAP--QSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLAQRS 1062 

                   kDrLFHialYdWLvaadredkLLdiesPFllPyLkrkAkksvdrvkisdL
                   kD+LF+ialY+WL++ad++dkLL+i+sPFl+P+L+r+A ++++rv+++dL
   mKIAA0791  1063 KDELFSIALYNWLIQADLADKLLQIASPFLEPHLVRMARVDQNRVRYMDL 1112 

                   LWkYYeKnshFseAAevLykLAssrSfdIkLeqRIEyLaRAnglckSsta
                   LW+YYeKn++Fs+AA+vL+kLA+++S++I+L+qR+Ey+aRA++++kSsta
   mKIAA0791  1113 LWRYYEKNRSFSSAARVLSKLADMHSTEISLQQRLEYIARAILSAKSSTA 1162 

                   lSskaadgqllkeledkldvArIQkdiLelvqeeasidsevkdalkkeLd
                   +Ss+aadg++l+ele+k++vArIQ++i+e++q+++s++s+v+da++ +Ld
   mKIAA0791  1163 ISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHSSVQDAIS-QLD 1211 

                   gkllditeLyndFAdPldlyEikLaIfkcadfkDpllIeskWdelieSlk
                   ++l+dit+Ly++FAdP++l+E+kLa+++ca+++Dp+l++++W+++ie+ +
   mKIAA0791  1212 SELMDITKLYGEFADPFKLAECKLAVIHCAGYSDPILVHTLWQDIIEK-E 1260 

                   lsdsvtgsssdrmnfLslksnvLikIykevrDsevvFPlaFLvreleekf
                   l dsv +sssdrm++Lslk+++L+kIy++   ++++FPl+F+v++le+++
   mKIAA0791  1261 LNDSVALSSSDRMHALSLKLVLLGKIYAG---TPRFFPLDFIVQFLEQQV 1307 

                   cetLPKlriaeGsVvsifveaGVslekLleiysrlIesrdrvWnsegnel
                   c+    l++++G+V+++++e+GV+l++Lle+y++l++srd++Wn+++++l
   mKIAA0791  1308 CT----LNWDVGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPFWNRVKSPL 1353 

                   hllkemvwLikewyendslvlyrekRrfrgliadavigkLeeyksksDpV
                   hll+++++L+++++en+slvl++e+Rrf++l++dav+g+L+e++s+s++V
   mKIAA0791  1354 HLLDCIHVLLTRYVENPSLVLNCERRRFTNLCLDAVCGYLVELQSMSSSV 1403 

                   ekyvkdGslkeLq<-*
                   ++++++G++k+Lq   
   mKIAA0791  1404 AVQAITGNFKSLQ    1416 

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