hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg16087/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0790 ( 1078 res) mbg16087 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SAM Sterile alpha motif. 102.6 4.7e-26 2 SH3 Src homology 3 domains 27.3 0.002 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SH3 1/1 398 455 .. 1 58 [] 27.3 0.002 SAM 1/2 471 538 .. 1 67 [] 53.4 3e-11 SAM 2/2 1005 1072 .. 1 67 [] 49.1 5.7e-10 Alignments of top-scoring domains: SH3: domain 1 of 1, from 398 to 455: score 27.3, E = 0.002 *->eyvvAlYDyea..qnedELsFkkGDiitvleksddgWweGelnrtGk +++++ D+++++ + d L +kkGDii +++k g w G ln +k mKIAA0790 398 GRARVHTDFTPspYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--NK 442 eGlfPsnYVeeie<-* +G f YV +++ mKIAA0790 443 VGTFKFIYVDVLN 455 SAM: domain 1 of 2, from 471 to 538: score 53.4, E = 3e-11 *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel + p+sV + L+ i+l +++++F+ ng+ + +l++eedL el mKIAA0790 471 GRpSQPKSVEDLLDRINLKEHMPTFLFNGYEDLDTFKLLEEEDLDEL 517 GitllGhRkkIlsaiqklkeq<-* i ++ hR +l a++ l+e mKIAA0790 518 NIRDPEHRAVLLTAVELLQEY 538 SAM: domain 2 of 2, from 1005 to 1072: score 49.1, E = 5.7e-10 *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel s+ ++ s ++WL sigl++Y+++++++g+++ ++ +s++ L+e mKIAA0790 1005 LSpGCVASMSDWLISIGLPMYTSTLSDAGFSTLSQVPSLSHSCLQEA 1051 GitllGhRkkIlsaiqklkeq<-* Git h +k++ a + +k + mKIAA0790 1052 GITEERHIRKLITAARLFKLP 1072 //