hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg16087/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0790  ( 1078 res)   mbg16087

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM_2    SAM domain (Sterile alpha motif)                90.5    3.3e-23   2
SAM_1    SAM domain (Sterile alpha motif)                50.8    3.1e-11   2
SH3_2    Variant SH3 domain                              30.2    4.7e-05   1
SH3_1    SH3 domain                                      -2.3       0.28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3_1      1/1     398   454 ..     1    58 []    -2.3     0.28
SH3_2      1/1     399   454 ..     1    69 []    30.2  4.7e-05
SAM_1      1/2     472   536 ..     1    66 []    36.5    6e-07
SAM_2      1/2     471   538 ..     1    72 []    41.9  1.5e-08
SAM_1      2/2    1006  1070 ..     1    66 []    14.2    0.017
SAM_2      2/2    1005  1072 ..     1    72 []    48.6  1.4e-10

Alignments of top-scoring domains:
SH3_1: domain 1 of 1, from 398 to 454: score -2.3, E = 0.28
                   *->kkvvALYDYeare..sdELsFkkGDvitvleksddgWWkgrlkgtgG
                       ++++  D++++  + d L +kkGD+i +++k + g W g l+   +
   mKIAA0790   398    GRARVHTDFTPSPydTDSLKLKKGDIIDIISKPPMGTWMGLLN---N 441  

                   keGliPsNYVepv<-*
                   k+G +   YV+     
   mKIAA0790   442 KVGTFKFIYVDVL    454  

SH3_2: domain 1 of 1, from 399 to 454: score 30.2, E = 4.7e-05
                   *->ygraiedyva.AtdknenleeeeLslkkGdvvkvidvggskdddgw.
                      ++r++ d++++++d++       L lkkGd++ +i      +++ ++
   mKIAA0790   399    RARVHTDFTPsPYDTDS------LKLKKGDIIDII-----SKPPMGt 434  

                   wlgeslggGrrrRGlvPssaveel<-*
                   w g +  ++++  G +++ +v +l   
   mKIAA0790   435 WMGLL--NNKV--GTFKFIYVDVL    454  

SAM_1: domain 1 of 2, from 472 to 536: score 36.5, E = 6e-07
                   *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeDLedl
                      + + + sV + L+ i l ++++ +Fl +gy d+dt+++l eeDL +l
   mKIAA0790   472    RPSQPKSVEDLLDRINL-KEHMPTFLFNGYEDLDTFKLLEEEDLDEL 517  

                   GvtllGHrkkIlssIqgLk<-*
                   +++ + Hr  +l +++ L    
   mKIAA0790   518 NIRDPEHRAVLLTAVELLQ    536  

SAM_2: domain 1 of 2, from 471 to 538: score 41.9, E = 1.5e-08
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                         + ++sv + L++i+l +++ + F+ +g++ l+   + l+eedL 
   mKIAA0790   471    GRPSQPKSVEDLLDRINL-KEHMPTFLFNGYEDLDTF-KLLEEEDL- 514  

                   klalGitsvghRkkilskiqelkqq<-*
                     +l+i ++ hR  +l++++ l++    
   mKIAA0790   515 D-ELNIRDPEHRAVLLTAVELLQEY    538  

SAM_1: domain 2 of 2, from 1006 to 1070: score 14.2, E = 0.017
                   *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeDLedl
                      +   v s ++WL sigl + Y+++   ag++++ ++  l+ + L++ 
   mKIAA0790  1006    SPGCVASMSDWLISIGL-PMYTSTLSDAGFSTLSQVPSLSHSCLQEA 1051 

                   GvtllGHrkkIlssIqgLk<-*
                   G+t   H  k+  + + +k   
   mKIAA0790  1052 GITEERHIRKLITAARLFK    1070 

SAM_2: domain 2 of 2, from 1005 to 1072: score 48.6, E = 1.4e-10
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                       +  ++ s+++WL sigl + Y+  +sd+g+++l+++ + l+++ L 
   mKIAA0790  1005    LSPGCVASMSDWLISIGL-PMYTSTLSDAGFSTLSQV-PSLSHSCL- 1048 

                   klalGitsvghRkkilskiqelkqq<-*
                   + + Git   h +k+++++  +k +   
   mKIAA0790  1049 Q-EAGITEERHIRKLITAARLFKLP    1072 

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