hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00420/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0788  ( 1909 res)   mpf00420

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   235.4    4.7e-66   2
HELICc   helicase superfamily c-terminal domain         118.7    6.5e-31   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/2     250   463 ..     1   219 []   115.6  5.5e-30
HELICc     1/2     541   633 ..     1    86 []    71.9  8.1e-17
DEXDc      2/2    1097  1301 ..     1   219 []   119.8    3e-31
HELICc     2/2    1380  1468 ..     1    86 []    46.8  2.8e-09

Alignments of top-scoring domains:
DEXDc: domain 1 of 2, from 250 to 463: score 115.6, E = 5.5e-30
                   *->gf.klrpyQkeaipwlleg.rdvilaapTGsGKTlafllpllellkk
                      gf++l+ +Q +  +++le +++++l+apTG+GKT ++l  +l+ + k
   mKIAA0788   250    GFkTLNRIQSKLYRAALETdENLLLCAPTGAGKTNVALMCMLREIGK 296  

                   gkplas.kkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvv
                   + +++ + + ++ ++++++P r+L++ ++  + k++  +g       ++v
   mKIAA0788   297 HINMDGtINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYG-------ITV 339  

                   glygGsktkekeqlrklksgktdilvtTpgrLldll.ngkg.lsl.nldl
                   + ++G     ++ql k +  +t+i+v+Tp+++    ++g  + + + ++l
   mKIAA0788   340 AELTG-----DHQLCKEEISATQIIVCTPEKWDIITrKGGErTYTqLVRL 384  

                   vilDEaHrlldmgsggdhgfgdqle.llkrl.......pknrqrlllSAT
                   ++lDE+H l d       ++g++le l+ r  ++ +   +++++++lSAT
   mKIAA0788   385 IVLDEIHLLHD-------DRGPVLEaLVARAirniemtQEDVRLIGLSAT 427  

                   pp.eienllklflnlpelfpnpvfisvgf..tlepieqf<-*
                   +p+  + ++ l        ++++ ++ +f++++++ +++   
   mKIAA0788   428 LPnYEDVATFLRVDPA---KGLFYFDNSFrpVPLEQTYV    463  

HELICc: domain 1 of 2, from 541 to 633: score 71.9, E = 8.1e-17
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      +    +Lk ll    +++a++H+g+++ +R+ +++ F +  i+vLv+
   mKIAA0788   541    QCKNLELKDLL---PYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVS 584  

                   TdvaerGlDipgvdlVInydl...........pwspasyiQRiGRaGRaG
                   T ++++G+++p +++VI+ + +  ++++++ + ++  + +Q+ GRaGR+ 
   mKIAA0788   585 TATLAWGVNLP-AHTVIIKGTqvyspekgrwtELGALDILQMLGRAGRPQ 633  

                   <-*
                      
   mKIAA0788     -     -    

DEXDc: domain 2 of 2, from 1097 to 1301: score 119.8, E = 3e-31
                   *->gf.klrpyQkeaipwlleg.rdvilaapTGsGKTlafllpllellkk
                      +f+ ++p+Q ++++ +++ + +v + apTGsGKT+++ +++l+ l++
   mKIAA0788  1097    KFpFFNPIQTQVFNTVYNSdDNVFVGAPTGSGKTICAEFAILRMLLQ 1143 

                   gkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvg
                   ++         +r+++++P  +LaeQ++  + + +++         k+v+
   mKIAA0788  1144 NS--------EGRCVYITPMEALAEQVYMDWYEKFQDRL------NKKVV 1179 

                   lygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkg.lsl.nldl
                   l++G++      +l+ l +g  +i++ Tp+++  l ++ k++ + +n++l
   mKIAA0788  1180 LLTGeT----STDLKLLGKG--NIIISTPEKWDILSrRWKQrKNVqNINL 1223 

                   vilDEaHrlldmgsggdhgfgdqle.llkrl.......pknrqrlllSAT
                   +++DE+H + +        +g++le +++r++  +++ ++ +++++lS  
   mKIAA0788  1224 FVVDEVHLIGG-------ENGPVLEvICSRMryissqiERPIRIVALSSS 1266 

                   pp.eienllklflnlpelfpnpvfisvgf....tlepieqf<-*
                   ++++ + + +l ++      +  +++  ++ +++++++++    
   mKIAA0788  1267 LSnAKDVAHWLGCS------ATSTFNFHPnvrpVPLELHIQ    1301 

HELICc: domain 2 of 2, from 1380 to 1468: score 46.8, E = 2.8e-09
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                       +l+e L +        v++lH gls+ eR+ +++ F +g i+v+va
   mKIAA0788  1380    STLKETLLNG-------VGYLHEGLSPMERRLVEQLFSSGAIQVVVA 1419 

                   TdvaerGlDipgvdlVInydl...........pwspasyiQRiGRaGRaG
                   ++ + +G ++  ++lVI++d +  +++ +   +  + + +Q++G a R+ 
   mKIAA0788  1420 SRSLCWGMNVA-AHLVIIMDTqyyngkihayvDYPIYDVLQMVGHANRPL 1468 

                   <-*
                      
   mKIAA0788     -     -    

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