hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpf/mpf00420/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0788 ( 1909 res) mpf00420 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Sec63 Sec63 domain 1324.6 0 2 DEAD DEAD/DEAH box helicase 275.6 6.3e-79 2 Helicase_C Helicase conserved C-terminal domain 62.0 1.3e-14 2 ResIII Type III restriction enzyme, res subunit 44.1 3.2e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ResIII 1/2 252 430 .. 1 244 [] 29.7 6.5e-07 DEAD 1/2 254 434 .. 1 266 [] 140.8 2.5e-38 Helicase_C 1/2 547 633 .. 1 76 [] 46.8 4.9e-10 Sec63 1/2 751 1060 .. 1 334 [] 676.6 1.2e-199 DEAD 2/2 1101 1273 .. 1 266 [] 134.7 1.7e-36 ResIII 2/2 1099 1285 .. 1 244 [] 14.3 1.4e-05 Helicase_C 2/2 1385 1468 .. 1 76 [] 15.2 0.0097 Sec63 2/2 1582 1898 .. 1 334 [] 653.8 9.3e-193 Alignments of top-scoring domains: ResIII: domain 1 of 2, from 252 to 430: score 29.7, E = 6.5e-07 *->iklRpyQeeAierllesiekgelrlatglkdkdkkkrglivmATGsG ++l+ Q ++ le + +++l++++TG+G mKIAA0788 252 KTLNRIQSKLYRAALE-----------------TDENLLLCAPTGAG 281 KTltaakiliarllkkqqklkhg.r...id.ds.kvLFlVprkdLleQal KT +a+ ++r + kh + +++i+ d+ k++ ++p ++L++ + mKIAA0788 282 KTNVALM-CMLREIG-----KHInMdgtINvDDfKIIYIAPMRSLVQEMV 325 eeFtkfeskkkkef.knpgvdkklkvltdnqkdsalegkskkndieiift F ++++ +++ ++ +d q + ++ii+ mKIAA0788 326 GSF---------GKrLATYGITVAELTGDHQLCKEE-----ISATQIIVC 361 tiQkLskalklgkendeeekskstesvvglrlavesleflldefdliIiD t k+ + ++g+e ++ ++ + li+ D mKIAA0788 362 TPEKWDIITRKGGER-------------------TYTQLVR----LIVLD 388 EaHrssaktksakededa.tk.l.e.vyrkilekwelelnkkyfkpaflL E H ++++ ++ +e+ +a++ ++ e + + + + mKIAA0788 389 EIHLLHDDRGPVLEALVArAIrNiEmTQEDVRL----------------I 422 GlTATPer<-* Gl+AT + mKIAA0788 423 GLSATLPN 430 DEAD: domain 1 of 2, from 254 to 434: score 140.8, E = 2.5e-38 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ptpiQaeaipaileneGfalredvlssggmdrlvlqApTGSGKTlaf +++iQ++ a+le ++ e++l + +ApTG+GKT ++ mKIAA0788 254 LNRIQSKLYRAALE-TD----ENLL--------L-CAPTGAGKTNVA 286 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx llPilygqrllkgpksarggksqgggkne.rgfkidspqalvlaPTreLa l +l + k+ + +g++n+++ +++++aP+r+L+ mKIAA0788 287 LMCML--REIGKHINM-------DGTINVdD------FKIIYIAPMRSLV 321 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx eQiyeelkkllkilalsplgvnellrrigtglrvavlslyGGsslkdqld ++++ + k+l+ ++g++va l mKIAA0788 322 QEMVGSFGKRLA----------------TYGITVAEL------------- 342 RF xx xxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx kl.rgkres.kggpdIvvgTPgrLldllrngrinikievssertgkl.kl + +++ ++++++ ++I+v+TP++++ + r+g g ++++ mKIAA0788 343 TGdHQLCKEeISATQIIVCTPEKWDIITRKG-------------GERtYT 379 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxx knlkhlkllVlDEahrlldmghgFgedleeilrrlprn.eplraqllgti + + +l+VlDE+h ll + ++g++le++++r rn e + mKIAA0788 380 QLV---RLIVLDEIH-LLHD--DRGPVLEALVARAIRNiE-MT------- 415 RF xxxxxxxxxxxxxxxxxxxxxxxx lHqkpniQtllfSATlpprevedl<-* ++++++++SATlp+ ed+ mKIAA0788 416 ---QEDVRLIGLSATLPNY--EDV 434 Helicase_C: domain 1 of 2, from 547 to 633: score 46.8, E = 4.9e-10 *->ll.epgikvarlhGglsqeeReeilekFrsgkskvLvaTdvaarGlD l +++ + +a +h+g++ +R+ +++ F + ++vLv+T +a G++ mKIAA0788 547 LKdLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVN 593 ipdvnlVInydlpwnpes..........yiQRiGRaGRaG<-* +p+ +++I +pe ++ ++ + + +Q+ GRaGR mKIAA0788 594 LPAHTVIIKGTQVYSPEKgrwtelgaldILQMLGRAGRPQ 633 Sec63: domain 1 of 2, from 751 to 1060: score 676.6, E = 1.2e-199 *->dfsptdLGRIASyYYItYtTietFnqlLketttekdlleilSqAsEF +f++t+LGRIAS+YYIt++T++t+nqlLk+t +e++l++++S +sEF mKIAA0788 751 NFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEF 797 dqipvReeEdleLrkLlerslPislacnesledphvKvNvLLQAYiSRlk ++i+vReeE+leL+kLler +Pi++ +es+e+p++K+NvLLQA+iS+lk mKIAA0788 798 KNITVREEEKLELQKLLER-VPIPV--KESIEEPSAKINVLLQAFISQLK 844 LegfaLvsDtvyVlqnAgRLirAlfdIllsrGWlslAlkaLeLskMitqr LegfaL++D+vyV+q+AgRL+rA+f+I+l+rGW++l+ k+L+L+kMi++r mKIAA0788 845 LEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKR 894 lWdsdsPLrQfPhlpaelikrcekkkgvlsverLldLeddElgeLLhmnd +W+s++PLrQf++lp+e++k++ekk ++++erL+dL+++E+geL++ ++ mKIAA0788 895 MWQSMCPLRQFRKLPEEVVKKIEKK--NFPFERLYDLNHNEIGELIR-MP 941 kqgadvakfvnLIryPkieleaelqpitrtvlrveltitpdftWDeevhG k+g++++k+v+ +Pk+el+++lqpitr++l+veltitpdf+WDe+vhG mKIAA0788 942 KMGKTIHKYVH--LFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHG 989 evpViAPlFPkkKeEgFWivveDsdsneLLhierflLnkkqvissdRLsh ++ E+FWi+veD+ds+ +Lh+e+flL+ k++ +d +h mKIAA0788 990 SS------------EAFWILVEDVDSEVILHHEYFLLKAKYA--QD--EH 1023 kLeFtiPlfePlppqYyirvVSDswLGaetelpvsfq<-* +++F++P+fePlppqY+irvVSD+wL +et+lpvsf+ mKIAA0788 1024 LITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFR 1060 DEAD: domain 2 of 2, from 1101 to 1273: score 134.7, E = 1.7e-36 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ptpiQaeaipaileneGfalredvlssggmdrlvlqApTGSGKTlaf ++piQ ++++ +++ ++ ++v+ v ApTGSGKT ++ mKIAA0788 1101 FNPIQTQVFNTVYN-SD----DNVF--------V-GAPTGSGKTICA 1133 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx llPilygqrllkgpksarggksqgggknergfkidspqalvlaPTreLae +++il ll++ + +++++++P+ +Lae mKIAA0788 1134 EFAIL--RMLLQNSE---------------------GRCVYITPMEALAE 1160 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxx Qiyeelkkllkilalsplgvnellrrigtglrvavl.slyGGsslkdqld Q+y ++ + ++ +r+++++ +++ + + mKIAA0788 1161 QVYMDWYEKFQ-------------DRLNKKVVLLTGeTSTD--------L 1189 RF xx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx kl.rgkreskggpdIvvgTPgrLldllrngrinikievssertgkl.klk kl + +I++ TP++++ l r++ ++ +++++ mKIAA0788 1190 KLlG-------KGNIIISTPEKWDILSRRW----------KQ---RkNVQ 1219 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx nlkhlkllVlDEahrlldmghgFgedleeilrrlprneplraqllgtilH n+ l+V+DE+h+++ + g++le i +r+++ +++q+ mKIAA0788 1220 NI---NLFVVDEVHLIGG---ENGPVLEVICSRMRY---ISSQI------ 1254 RF xxxxxxxxxxxxxxxxxxxxxx qkpniQtllfSATlpprevedl<-* + +i+++++S l+++ +d+ mKIAA0788 1255 -ERPIRIVALSSSLSNA--KDV 1273 ResIII: domain 2 of 2, from 1099 to 1285: score 14.3, E = 1.4e-05 *->iklRpyQeeAierllesiekgelrlatglkdkdkkkrglivmATGsG ++p Q + ++ + +s ++ + ++TGsG mKIAA0788 1099 PFFNPIQTQVFNTVYNS-----------------DDNVFVGAPTGSG 1128 KTltaakiliarllkkqqklkhg.riddskvLFlVprkdLleQaleeFtk KT++a +i+r l ++ ++ + + + p ++L+eQ + ++ mKIAA0788 1129 KTICAEF-AILRMLL-----QNSeG----RCVYITPMEALAEQVYMDW-- 1166 feskkkkefknpgvdkklkvltdnqkdsalegkskkndieiifttiQkLs ++ + +++ ++kv+ ++++s++ + ii++t k+ mKIAA0788 1167 --YE------KFQDRLNKKVVLLTGETSTD--LKLLGKGNIIISTPEKWD 1206 kalklgkendeeekskstesvvglrlavesleflldefdliIiDEaHrss +++ ++++++ l+++DE+H ++ mKIAA0788 1207 ILSRR-----------------------WKQRKNVQNINLFVVDEVHLIG 1233 aktksakededa..tk.l.e.v.yrkilekwel.e.l.nkkyfkpaflLG +++++ +e + + + +++ + +i + l+ +l+n k a++LG mKIAA0788 1234 GENGPVLEVICSrmRYiSsQiErPIRIVA---LsSsLsNAK--DVAHWLG 1278 lTATPer<-* +AT + mKIAA0788 1279 CSATSTF 1285 Helicase_C: domain 2 of 2, from 1385 to 1468: score 15.2, E = 0.0097 *->ll.epgikvarlhGglsqeeReeilekFrsgkskvLvaTdvaarGlD l + v++lh gls+ eR+ +++ F sg ++v+va++ + G + mKIAA0788 1385 TLlNG---VGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMN 1428 ipdvnlVInydl...........pwnpesyiQRiGRaGRaG<-* + ++ lVI++d + +++ + + + + +Q++G a R mKIAA0788 1429 V-AAHLVIIMDTqyyngkihayvDYPIYDVLQMVGHANRPL 1468 Sec63: domain 2 of 2, from 1582 to 1898: score 653.8, E = 9.3e-193 *->dfsptdLGRIASyYYItYtTietFnqlLketttekdlleilSqAsEF d++p++LG+IA+yYYI+YtTie+F+++L+++t++++l+ei+S+A+E+ mKIAA0788 1582 DVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEY 1628 dqipvReeEdleLrkLlerslPislacnesledphvKvNvLLQAYiSRlk ++ip+R++Ed++Lr+L+++ +P++l+ n++++dphvK+N+LLQA++SR++ mKIAA0788 1629 ENIPIRHHEDNLLRQLAQK-VPHKLN-NPKFNDPHVKTNLLLQAHLSRMQ 1676 LegfaLvsDtvyVlqnAgRLirAlfdIllsrGWlslAlkaLeLskMitqr L++ +L+sDt+++l++A+RLi+A++d+l+s+GWls+Al a+eL++M+tq+ mKIAA0788 1677 LSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQA 1725 lWdsdsPLrQfPhlpaelikrcekkkgvlsverLldLeddElgeLLhmnd +W++ds+L+Q+Ph+++e+ikrc++ kgv+sv++++++ed+E++ LL+++d mKIAA0788 1726 MWSKDSYLKQLPHFTSEHIKRCTD-KGVESVFDIMEMEDEERNALLQLTD 1774 kqgadvakfvnLIryPkieleaelqpitrtvlrveltitpdftWDeevhG +q+adva+f+n ryP+iel++e++++++++++ +++++++++++eev+G mKIAA0788 1775 SQIADVARFCN--RYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTG 1822 evpViAPlFPkkKeEgFWivveDsdsneLLhierflLnkkqvissdRLsh pViAPlFP+k+eEg+W+v++D++sn+L++i+r++L++k+ ++ mKIAA0788 1823 --PVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKA-------KV 1863 kLeFtiPlfePlppqYyirvVSDswLGaetelpvsfq<-* kL+F++P +++ ++Y+++++SD ++G+++e+++s++ mKIAA0788 1864 KLDFVAP--ATGGHNYTLYFMSDAYMGCDQEYKFSVD 1898 //