hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06488/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0787  ( 419 res)   mbg06488

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Pkinase     Protein kinase domain                       203.4    3.4e-57   1
Pkinase_Tyr Protein tyrosine kinase                     -17.7      9e-11   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Pkinase_Tyr   1/1      15   234 ..     1   272 []   -17.7    9e-11
Pkinase       1/1       8   240 ..     1   287 []   203.4  3.4e-57

Alignments of top-scoring domains:
Pkinase_Tyr: domain 1 of 1, from 15 to 234: score -17.7, E = 9e-11
                   *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLkeigasseeie
                                       G +                       +   
   mKIAA0787    15    -----------------GGCI------------------QPRGP--- 23   

                   redFlrEAsiMkklGdHpNiVrLlGvctkegePggpg.lyiVtEymegGd
                   +e   +E++i+kkl dHpN+V+L   +   ++P ++++ly+V+E++  G 
   mKIAA0787    24 IEQVYQEIAILKKL-DHPNVVKL---VEVLDDP-NEDhLYMVFELVNQGP 68   

                   LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV
                       +  +   +pL+  +   + ++  kG eYL+ ++++HRD+   N LV
   mKIAA0787    69 V---MEVP-TLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLV 114  

                   senlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygk..Ft
                   +e++++KI+DFG +      d      +++      mAPEsl++ ++ F+
   mKIAA0787   115 GEDGHIKIADFGVSNEFKGSD---ALLSNTVGTPAFMAPESLSETRkiFS 161  

                   skS.DVWSFGVlLWEiftlGeqPFYpgmsneevlellyed..GyRLprPe
                    k  DVW+ GV+L+  f +G+ P + +     +  ++ +++  +  ++P+
   mKIAA0787   162 GKAlDVWAMGVTLY-CFVFGQCP-FMDERIMCLHSKI-KSqaLEFPDQPD 208  

                   nCPdelYdlMlqCWaedPedRPtFselverL<-*
                    + ++l dl+++  +++Pe R     +v ++   
   mKIAA0787   209 IA-EDLKDLITRMLDKNPESRI----VVPEI    234  

Pkinase: domain 1 of 1, from 8 to 240: score 203.4, E = 3.4e-57
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                                     + a+    g      +i  r+  +++ +    
   mKIAA0787     8    ---------------RGARPAPGG------CIQPRGPIEQVYQ---- 29   

                   rsEiqilkrLsHpNIvrlidvfed..kdhlylVlEycegGLrlldLfdyl
                     Ei+ilk+L+HpN+v+l +v  d+++dhly+V+E+++ G  +++     
   mKIAA0787    30 --EIAILKKLDHPNVVKLVEVLDDpnEDHLYMVFELVNQG-PVMEVP--- 73   

                   setrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILlden
                         +pl  sed+a++++  +++g+eYLH ++iiHRD+KP+N+L+ e+
   mKIAA0787    74 ----TLKPL--SEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGED 117  

                   gvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvll..ggngyg
                   g++    KiaDFG++  +  +s+  l+  vGTp +mAPE l ++     g
   mKIAA0787   118 GHI----KIADFGVSNEF-KgSDAlLSNTVGTPAFMAPESLSetRKIFSG 162  

                   tkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspe
                   ++ DvW++Gv+ly++++G+ PF +e     + + l+ ki++  lef+ + 
   mKIAA0787   163 KALDVWAMGVTLYCFVFGQCPFMDE-----RIMCLHSKIKSQALEFPDQP 207  

                   wdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                   ++              e++kdLi+++L+k+P++R+  +ei+ HPw+   
   mKIAA0787   208 DIA-------------EDLKDLITRMLDKNPESRIVVPEIKLHPWV    240  

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