hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11105/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0786  ( 891 res)   mpm11105

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Latrophilin Latrophilin Cytoplasmic C-terminal region   801.6   2.9e-237   1
7tm_2       7 transmembrane receptor (Secretin family   376.4     3e-109   1
GPS         Latrophilin/CL-1-like GPS domain            106.3    6.1e-28   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
GPS           1/1     259   311 ..     1    55 []   106.3  6.1e-28
7tm_2         1/1     319   566 ..     1   296 []   376.4   3e-109
Latrophilin   1/1     576   891 .]     1   404 []   801.6 2.9e-237

Alignments of top-scoring domains:
GPS: domain 1 of 1, from 259 to 311: score 106.3, E = 6.1e-28
                   *->tnpiCvfWdesslestgvWstdrGCevveenkpshttCsCnHLTtFA
                      +n++C+fW++s+++++g+Wst +GC++v++nk ++ttC C+HLT+FA
   mKIAA0786   259    FNANCSFWNYSERTMMGYWST-QGCKLVDTNK-TRTTCACSHLTNFA 303  

                   vlmdvppn<-*
                   +lm+++++   
   mKIAA0786   304 ILMAHREI    311  

7tm_2: domain 1 of 1, from 319 to 566: score 376.4, E = 3e-109
                   *->lllLkviytVGyslSSLvaLllAiaifllfRkLhCtRnyIHlNLfas
                       llL+vi++VG+ +S Lv+L+++i++f++fR L+++Rn+IH+NL++ 
   mKIAA0786   319    HLLLTVITWVGIVVS-LVCLAICIFTFCFFRGLQSDRNTIHKNLCIN 364  

                   fiLralsfLikdavlfnsvglseadqlsweeslhcsasagkitmivvVgC
                   +++++ +fLi++++++  ++                             C
   mKIAA0786   365 LFIAEFIFLIGIDKTKYTIA-----------------------------C 385  

                   kvvavflhYfflaNFfWmLVEGlYLhtllvvtvevffserkrfwwYlliG
                    v+a++lh+ffla+F Wm++EG++L+++l   vevf se +r+++Y+++G
   mKIAA0786   386 PVFAGLLHFFFLAAFSWMCLEGVQLYLML---VEVFESEYSRKKYYYVAG 432  

                   WGvPavfvgiwaivrpdkwagygnegCCWlsnedngyfwWiikGPvllvI
                   + +Pa +vg++a+++++   +yg+ + CWl+   ++yf+W++ GPv+++I
   mKIAA0786   433 YLFPATVVGVSAAIDYK---SYGTVQACWLHV--DNYFIWSFIGPVTFII 477  

                   lvNfilFinilriLvqKlridkslspqmgetdqyrkkrlakstLlLlPLL
                   l+N+i+++++l+++v++ +   +l+p+ +++++++  +++ ++++Ll+LL
   mKIAA0786   478 LLNIIFLVITLCKMVKHSN---TLKPDSSRLENIK--SWVLGAFALLCLL 522  

                   GitwvlflfapeddsqGvssivflylfliLnSfQGffVavlYCFlNgEV<
                   G+tw ++l+++++      ++v++ylf+ +n fQG+f+++++C l+++V 
   mKIAA0786   523 GLTWSFGLLFVNE-----ETVVMAYLFTAFNAFQGLFIFIFHCALQKKV  566  

                   -*
                     
   mKIAA0786     -    -    

Latrophilin: domain 1 of 1, from 576 to 891: score 801.6, E = 2.9e-237
                   *->hihccSllPrgsPrSalkeSskdsgkrsgSgdPlryslGsqSRIRRM
                      h++cc++lP++sP+S++k+S+ ++++r++Sg        +qSRIRRM
   mKIAA0786   576    HWYCCGGLPTESPHSSVKASTTRTSARYSSG--------TQSRIRRM 614  

                   WNDTVRKQsESSFiaGDINStatLNrGamgNhLLtNplLrPhGtnnPYNT
                   WNDTVRKQsESSFi+GDINSt+tLN+G                       
   mKIAA0786   615 WNDTVRKQSESSFISGDINSTSTLNQG----------------------- 641  

                   LLAEsvvcNapSapvFNspgsllePKHsLnnaRdtSaMDTLPLNGNFnNS
                                             HsLnnaRdtSaMDTLPLNGNFnNS
   mKIAA0786   642 --------------------------HSLNNARDTSAMDTLPLNGNFNNS 665  

                   YSLrsGdYhlsdGvqvvDRGlnlndAtAfEKmIisELvhNYiPSYLNlrg
                   YSLr++dYh  dGvqvvD+Gl+lnd tAfEKmIisELvhN      Nlrg
   mKIAA0786   666 YSLRKADYH--DGVQVVDCGLSLND-TAFEKMIISELVHN------NLRG 706  

                   rSseakrlelekpVkpvigGssSEDdAivlDdAslFnHedslgLELlhke
                     +++++lel++pVkpvigGssSEDdAiv+D++sl +H+d++gLE++hke
   mKIAA0786   707 -GNKTHNLELKLPVKPVIGGSSSEDDAIVADASSL-MHGDNPGLEFRHKE 754  

                   leaPLLppRvySvENHqLYqsdRRRiPkKvKPdeseSfvaeltaeadedl
                   leaPL+p+R++S+    LYq++     kKvKP++++S+v++ltaead +l
   mKIAA0786   755 LEAPLIPQRTHSL----LYQPQ-----KKVKPEATDSYVSQLTAEADDHL 795  

                   qSPnRDSLYtSmpnLrDsPsypesspetqaEdLsPpppAkcGdeeDiYYk
                   qSPnRDSLYtSmpnLrDsP ypessp+ +aEdLsP+++++  +e+ iYYk
   mKIAA0786   796 QSPNRDSLYTSMPNLRDSP-YPESSPD-MAEDLSPSRRSE--NED-IYYK 840  

                   SmPPnLgARnHvHqLqtYYQvsRGssdGYivppnkeGtiPeGSSdvREGq
                   Sm PnLgA++    L+++YQ+sRG+sdGYi+p+nkeG+iPeG  dvREGq
   mKIAA0786   841 SM-PNLGAGR---HLHMCYQISRGNSDGYIIPINKEGCIPEG--DVREGQ 884  

                   mqLVTSL<-*
                   mqLVTSL   
   mKIAA0786   885 MQLVTSL    891  

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